CX043308

Overview
NameCX043308
Unique NameCX043308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13342 contig Csv1_Contig13342:73..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043308 vs. ExPASy Swiss-Prot
Match: PAO5_ARATH (Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.880e-47
Identity = 105/202 (51.98%), Postives = 123/202 (60.89%), Query Frame = -1
Query:  234 SLSKFPFLHLAFHRPDSEFRNKKIPWWMRRTAALCPIYKKSSVLLSWFAGXXXXXXXXXXXXDIINGVSTTISSFLSQPQKKVESNSHELWNGNVNHHVESSKGSEVKFTKVLKSKWGNDPLFLXXXXXXXXXXXGDDLDTMAEPLPKIGP------NFESSAIPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 821
            S  KFP L L F R DSEFR  KIPWWMRRTA + PI+  S VLLSWFAG            +I + V TTIS    +  K     +  L NG++N   E+     +K TKVLKSKWG+DPLF            GDDLD MAEPLPKI          + + +  LQ++FAGEATHRTHYSTTHGAY+SGLREANRLL+HY
Sbjct:  335 SQRKFPSLQLVFDREDSEFRFVKIPWWMRRTATITPIHSNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVK--NDTAKPLTNGSLNDDDEA-----MKITKVLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLREANRLLKHY 529          
BLAST of CX043308 vs. ExPASy Swiss-Prot
Match: SMOX_MOUSE (Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  225 KVLKSKWGNDPLFLXXXXXXXXXXXGDDLDTMAEPLPKIGPNFESSAIPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYHSV 491
            ++L+S WG++P F            G D++ +A+PLP      ESS   P+Q+LF+GEATHR +YSTTHGA  SG REA RL++ Y  +
Sbjct:  466 RILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYT----ESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDL 550          
BLAST of CX043308 vs. ExPASy Swiss-Prot
Match: SMOX_HUMAN (Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  225 KVLKSKWGNDPLFLXXXXXXXXXXXGDDLDTMAEPLPKIGPNFESSAIPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYHSV 491
            ++L+S WG++P F            G D++ +A+PLP      ESS   P+Q+LF+GEATHR +YSTTHGA  SG REA RL++ Y  +
Sbjct:  466 RILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYT----ESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDL 550          
BLAST of CX043308 vs. ExPASy Swiss-Prot
Match: PAOX_MOUSE (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus GN=Paox PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  228 VLKSKWGNDPLFLXXXXXXXXXXXGDDLDTMAEPLPKIGPNFESSAIPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYHS 488
            V +S+W + P              GDDLD MA+PLP+ G   +      LQ+LFAGEATHRT YSTTHGA  SG REA+RL+  + S
Sbjct:  415 VRRSQWHSAPYTRGSYSYVAVGSTGDDLDLMAQPLPEDGTGTQ------LQVLFAGEATHRTFYSTTHGALLSGWREADRLVSLWDS 495          
BLAST of CX043308 vs. ExPASy Swiss-Prot
Match: PAOX_HUMAN (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens GN=PAOX PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.695e-12
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = -1
Query:  243 VLKSKWGNDPLFLXXXXXXXXXXXGDDLDTMAEPLPKIGPNFESSAIPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLL 488
            VL+S+W + P              G DLD +A+PLP  G   +      LQILFAGEATHRT YSTTHGA  SG REA+RLL
Sbjct:  560 VLRSRWHSAPYTRGSYSYVAVGSTGGDLDLLAQPLPADGAGAQ------LQILFAGEATHRTFYSTTHGALLSGWREADRLL 635          
BLAST of CX043308 vs. ExPASy Swiss-Prot
Match: PAOX_BOVIN (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus GN=PAOX PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = -1
Query:  243 VLKSKWGNDPLFLXXXXXXXXXXXGDDLDTMAEPLPKIGPNFESSAIPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLL 488
            +L+S W + P              GDD+D +A+PLP  G   +      LQ+LFAGEATHRT YSTTHGA  SG REA+RL+
Sbjct:  423 MLRSCWHSAPYTRGSYSYVAVGSSGDDMDRLAQPLPSDGKGAQ------LQVLFAGEATHRTFYSTTHGALLSGWREADRLM 498          
The following BLAST results are available for this feature:
BLAST of CX043308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PAO5_ARATH7.880e-4751.98Probable polyamine oxidase 5 OS=Arabidopsis thalia... [more]
SMOX_MOUSE3.947e-1444.94Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1[more]
SMOX_HUMAN3.947e-1444.94Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1[more]
PAOX_MOUSE1.658e-1248.28Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
PAOX_HUMAN3.695e-1251.22Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
PAOX_BOVIN1.404e-1147.56Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10B12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B12-D24-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043308 ID=CX043308; Name=CX043308; organism=Citrus sinensis; type=EST; length=863bp
AAGCTTCTTTAATTTATGCAATACATCTAAAAATGGTCCCAATCCATCTC
TTTCATTCCTCCTCCCTAATTTCTTTTTCATTCTTGTTTGCACTCATGCT
TGCTTTATAGAAAGCAAGATGTTTTAGATGGAAAATTAAAAAAAGAAAAA
AGAAAAAAAAAAAGATATCAGGAAAATAGGTGTTAAATAAAATAAAGAAA
GTACTAATAAATGTCCTAAGCCCCCACAGAATGATAATGTTGAAGAAGCC
TATTGGCTTCTCTAAGACCACTAAAATAAGCTCCATGAGTAGTAGAATAA
TGAGTTCTGTGGGTTGCTTCCCCTGCAAAAAGGATTTGAAGTGGAGGAAT
TGCCGATGACTCAAAATTGGGACCAATCTTTGGTAATGGCTCGGCCATGG
TGTCCAAATCATCGCCACTTGATCCAACCGCAACATAACTGTATGATCCC
AAGAATAGAGGATCATTACCCCATTTGCTCTTCAAAACCTTGGTGAATTT
CACTTCACTTCCTTTTGAGCTTTCCACATGATGATTCACATTCCCATTCC
ATAATTCATGGGAATTAGATTCCACTTTCTTTTGGGGTTGCGACAAAAAG
CTAGAGATTGTTGTTGATACCCCATTAATAATATCTTCATCACTAAGTGA
TTCAAGCTCGAGTGCTTCCTCCCCTGCAAACCAAGATAGTAAAACACTTG
ATTTCTTGTAAATTGGACACAAAGCAGCTGTCCTCCTCATCCACCAGGGG
ATCTTTTTGTTTCGGAATTCGGAGTCAGGACGATGAAAGGCCAGATGCAG
GAAGGGGAACTTGCTCAAGCTATCGCCTTTCGGAGTATCATGTGATGTTG
ATGGACTTAATTG
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