CX043304

Overview
NameCX043304
Unique NameCX043304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.393e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = -1
Query:  398 KEFPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 658
            +E PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  259 EEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.442e-38
Identity = 83/104 (79.81%), Postives = 88/104 (84.62%), Query Frame = -1
Query:  398 GPHPPTNRYNLRK-----EFPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 694
            GP   T   +LR        PGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  238 GPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.671e-35
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = -1
Query:  398 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 649
            PGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  255 PGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = -1
Query:  398 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 649
            PGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  261 PGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.492e-32
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1
Query:  431 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 649
            PGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  258 PGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = -1
Query:  464 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 646
            GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  253 GMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.393e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = -1
Query:  464 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 646
            GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  249 GMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.026e-16
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = -1
Query:  464 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 646
            GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  256 GMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = -1
Query:  422 MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 643
            M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  262 MRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CX043304 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.005e-15
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  425 MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 643
            M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  256 MRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CX043304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
THI4_CITSI1.393e-4197.70Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.442e-3879.81Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH9.671e-3586.90Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.182e-3283.33Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.492e-3293.15Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH1.403e-1772.13Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX2.393e-1772.13Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR2.026e-1670.49Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA2.646e-1655.41Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO1.005e-1560.27Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10B10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B10-D20-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043304 ID=CX043304; Name=CX043304; organism=Citrus sinensis; type=EST; length=898bp
TTGATCTTAATCACATCAGCACTTTCCCATTGGCTGATGCCTCAAGTTAT
AAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACAT
AACACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCTCCGAAAA
ACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTC
CATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATTAT
CTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACTACTT
TTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTG
TTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAA
GATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTAATGCATTCG
GCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATC
ATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCTCGGC
AACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCC
TCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGG
AACTCCTTGCGCAGGTTATACCGATTGGTCGGAGGGTGGGGCCCCCCCAT
GGTTTTCACTTATTGCTGATGATGAAATTAATGGAAATATTGATCTTCTT
GTAGTCCCACAATATGGAAGAAACCCTGATCACACTGGTTAAGAATATGC
AGTATTAGTCTCTTATGTTATGTTTAAGAAAATAAAAGTATGGGTACTGT
TATTACCCGTCAATTGTACGATGGTCTCAGTTTGGTTCAGTTTAACTT
back to top