CX043295

Overview
NameCX043295
Unique NameCX043295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:328..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043295 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 54/105 (51.43%), Postives = 64/105 (60.95%), Query Frame = -2 
Query:  410 RGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 724
            RGLG LRK+   PL +K+ GE+           S                   ARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   19 RGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX043295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.370e-1951.43Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10B05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B05-D10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043295 ID=CX043295; Name=CX043295; organism=Citrus sinensis; type=EST; length=725bp
CAGAGAAGCAACTTATTTATTAATAATAAAACATATATGCTCATCACGAC
CGTCCACGAAGGGATGATCTTGGCTCTTACAAAATGACAATCAAAAACAT
GTCCTAAACCCAAAAACCAGCAACCTTTCATCTCCGCCCACAGCTTAGCA
ATCCTCACATCACATACAATTATTAAATTATATGATATAAAAACATCACA
GTCTTTAGTTTACTTTTAGTCAGCAGCATTTTAAAACCAAACTTTAGATA
GGAAGGACACGTAATACAAATAGCATTAACAAAACGACAAGGACACGTTG
CGAAATCCAAAACGAAACGACACTATCTACAGACTACAGGCAACTCATCC
GGTGAGTTGGTGACCCATCACATTCATTTACATCGCTGGAGCGTATCATC
CACTCAGTGATGATGCTTGCTCCTAGTCTCCCCACTGTAAAGCCAGTCAT
AAACAGTGGGAGAGTTAGGATGTGTGGGCTTGTCAAAGACCTCTGCACCG
ATACCCCTAGTAGCAAGGTTGCTACCGGGGTGAAACACGCTCCTCCACAC
GTTGTCCTTACGCGCCGACAGCGGCGTCGTCGGCGTCACTGGCGTCGACG
GTGCCCCTGGACTCGCTGGCATTGACAGAGACCTCTGGAACTTGCCCGAC
GACGACTCCGCCTCACCACCCTCTTTGACTGCTAAGGGTGTTGTGGTGAT
TTTCCTCAGCCTGCCAAGGCCACGA
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