CN186137

Overview
NameCN186137
Unique NameCN186137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2199 contig Csv1_Contig2199:119..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186137 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 55/101 (54.46%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  364 AAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 666
            A  K+ A  KA K + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D             K++YEK M AYN
Sbjct:   18 AVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113          
BLAST of CN186137 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  364 VKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 687
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT              K +YEK + AYN
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105          
BLAST of CN186137 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = -1
Query:  364 VKPVEDRAAGKRKAVLKA-SKSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 687
            +K  + + A K  A L   SK + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++             KL+Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110          
BLAST of CN186137 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  364 EDRAAGKRKAVLKASKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 675
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++             K +YE  + AYN
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114          
BLAST of CN186137 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = -1
Query:  364 VKPVEDRAAGKRKAVLKA-SKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 687
            +K  + + A K  A L   SK + K     K  K  KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++             K +Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111          
The following BLAST results are available for this feature:
BLAST of CN186137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN8.143e-2254.46HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI8.143e-2249.07HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE6.452e-1947.27DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA1.877e-1847.17HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT6.039e-1745.05HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186137 ID=CN186137; Name=CN186137; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTTTTTACATACAAACTCCGTAACTATATATAAAACATT
ACTCAAAACAGTAGGAATATATGCAGACTGCAGGCGAATGCAGTACCAGC
ATTACATTACAAGTTGGCAGAACGAAGAGTTGAATTCTTTTATAGTTAAA
AACACAAAATAACCCAACTGCATGGTCATACAACGTCCAGGATTTTTTCT
GGATAAAGCAAAGGAACTATACCCAGTAGCGCTCCTGAATCTAGTCGTCG
TCCTCCTCTTCATCCTCCTCTTCAAGTTCTTCATCATCGTCGTCGTCATG
CACCTCGGATTTTGACTTCTCAGACTCCTCTTCATCTTCATCTTCAGTAC
TTTCCTGTTTCTTGTTGTATGCTGTCATCAGCTTTTCATAATCCAATTTC
CTTTTTGCTGCTTTTGCTTCAAATGGGGCTTTTTCTGCATCAGTCAGCGA
CTTCCATTTCTCTCCCCCAGCTTTCCCCACAGCTGAGACAGCTTTAACAT
TGGGATGCTCTTGTTTGTAAACCTTTCTGAACTCTTCTAGGAAAACAAAA
AAAGCACTAGGAGGCCTCTTCGGCTTGTTAGGGTCTTTCTTTGCTGACTT
GACATTCTTGGTGCGCTTGTTGCTACTCTTACTAGCTTTAAGCACAGCCT
TTCGCTTTCCTGCAGCTCTGTCCTCAACAGGCTTCACTACTTCATTTTT
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