CN186115

Overview
NameCN186115
Unique NameCN186115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186115_ssr612 microsatellite CN186115_ssr612:612..621. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186115 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 54/184 (29.35%), Postives = 100/184 (54.35%), Query Frame = -3
Query:   48 MVDAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKVCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSI-DESEIFGREKEKNELVDRLL 596
            M +A L  +LE LTS       +++ L+ G  KE +KL+S    I+AVL DA+++Q+K++ +  WL +L    Y+++D+LGE     ++ +     + ++  + P    F       R  I  ++KEI E LD I++++  F F+  +T  +A         +  E +++GR+KE++E+V  L+
Sbjct:    1 MAEAFLQVLLENLTSFI----GDKLVLIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDKAIENWLQKLNSAAYEVDDILGECKNEAIRFE-----QSRLGFYHPGIINF-------RHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATRETGFVLTEPKVYGRDKEEDEIVKILI 168          
BLAST of CN186115 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 59/195 (30.26%), Postives = 101/195 (51.79%), Query Frame = -3
Query:   18 MVDAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNT--ARLKLQIDGVPKKKVCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLL*EGSKEQKGP 596
            M +A L  +L+ LT     E    + LV G  KE KKL+S   +I+AVL DA+++Q+K + ++ WL +L    Y+++D+L +  T  AR K  + G        + P    F  K       +  ++KE+ E LD IA+++  F     +   +A +R      + E +++GREKE++E+V  L+   S  ++ P
Sbjct:    1 MAEAFLQVLLDNLTFFIQGE----LGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLG-------RYHPRTITFCYK-------VGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGF-VLTEPKVYGREKEEDEIVKILINNVSYSEEVP 176          
BLAST of CN186115 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 49/191 (25.65%), Postives = 98/191 (51.31%), Query Frame = -3
Query:   24 MVDAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKVCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLL*EGSKEQK 596
            M +A +  +L+ LTS      K ++ L+ G   E ++L+S    I+AVL DA+++Q+ ++ +  WL +L    Y+++D+L E+ T   +       + +   + P       K +  R  +  ++ ++ + L+ IA+++  F     +   +A  R    S + E +++GR+KEK+E+V  L+   S  QK
Sbjct:    1 MAEAFIQVVLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKTKATRFL-----QSEYGRYHP-------KVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETG-SVLTEPQVYGRDKEKDEIVKILINTASDAQK 174          
BLAST of CN186115 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 46/183 (25.14%), Postives = 94/183 (51.37%), Query Frame = -3
Query:   48 MVDAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKVCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLL 596
            M +A +  +L+ LTS      K ++ L+ G   E ++L+S    I+AVL DA+++Q+  + +  WL +L    Y+++D+L E+ T   +       + +   + P       K +  R  +  ++ ++ + L  IA+++  F     +   +A +R    S + E +++GR+KEK+E+V  L+
Sbjct:    1 MAEAFIQVLLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFS-----QSEYGRYHP-------KVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETG-SVLTEPQVYGRDKEKDEIVKILI 166          
BLAST of CN186115 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = -3
Query:   30 VKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKVCSFFPTASCFACKPLV--LRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLL*EGSKE 494
            +++L+++L  I AVL DAE++Q+    V  W+++LR   Y  ED L +  T  L+L I G                +    +      +  +++++   L+ +A Q+++ G +  +T     QR+P+ S +DESE+FGR+ +K+E++  L+ E  K+
Sbjct:   39 LERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEALRLNI-GAESSSSNRLRQLRGRMSLGDFLDGNSEHLETRLEKVTIRLERLASQRNILG-LKELTAMIPKQRLPTTSLVDESEVFGRDDDKDEIMRFLIPENGKD 193          
The following BLAST results are available for this feature:
BLAST of CN186115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RGA4_SOLBU5.372e-1729.35Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU2.257e-1530.26Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA1_SOLBU1.617e-1325.65Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU2.336e-1225.14Disease resistance protein RGA2 OS=Solanum bulboca... [more]
R13L1_ARATH5.753e-1128.03Putative disease resistance RPP13-like protein 1 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186115 ID=CN186115; Name=CN186115; organism=Citrus sinensis; type=EST; length=766bp
GCGTTTGAGATGATAGAGGGGCCTTTCTGTTCTTTACTACCCTCTCATAA
CAACCTATCAACGAGTTCGTTCTTCTCTTTTTCTCTACCAAATATCTCGG
ACTCATCAATTGAGGAGATACTTGGTACTCGTTGATCCGCTCTCTCATTA
GTAACATTCACAACAAAACCAAACATGTCTTTCTGTTTGGCAATATCATC
AAGAGTTTCGTTGATTTCTTTTATCTTCAGAGCAATGTCACGACGTAAGA
CAAGTGGTTTGCAGGCAAAGCAAGATGCAGTAGGAAAGAAGGAACATACC
TTCTTCTTAGGCACTCCGTCGATCTGCAGTTTGAGCCTTGCAGTGTTCCA
CTCACCCAACACGTCTTCCATGTCGTAACATGTGCATCTGAGTTGATCGA
GCCAGAGTCTGACAGTTTCCTCCTTCACTTGCCTTTTCTCTGCATCATGG
AGCACAGCTTCAATGACGCGGAGACTGCTGGTCAGCTTCTTCACTTCCTT
TCCGACACCCGTTACTAGCCTCACTTGTTCCTTCGCCTCTTCAACAGCCA
TTGAAGTCAGCTGCTCCAAGATAGGGGAAAGGATCGCATCAACCATGGTG
AAAAAGAAAAAAGAGAGAGAGAAGAAATTGATGGTGAATTGTTGCAAATG
TAAGTAGCTAATGCTGAAAGAAATGAAGGAGCTGATAATGTGGTGAAAAT
GTTGCCGTATTCTTTCAATTCTTATAGTACTGCAAGCAAAATTCTAATTT
AGAAATATTTCATTTC
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