CN186114

Overview
NameCN186114
Unique NameCN186114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186114 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 52/182 (28.57%), Postives = 97/182 (53.30%), Query Frame = 3
Query:  210 DAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKGCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSI-DESEIFGREKEKNELVDRLL 752
            +A L  +LE LTS       +++ L+ G  KE +KL+S    I+AVL DA+++Q+K++ +  WL +L    Y+++D+LGE     ++ +      +    F+          +  R  I  ++KEI E LD I++++  F F+  +T  +A         +  E +++GR+KE++E+V  L+
Sbjct:    3 EAFLQVLLENLTSFI----GDKLVLIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDKAIENWLQKLNSAAYEVDDILGECKNEAIRFE------QSRLGFYHPGI------INFRHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATRETGFVLTEPKVYGRDKEEDEIVKILI 168          
BLAST of CN186114 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 58/193 (30.05%), Postives = 100/193 (51.81%), Query Frame = 3
Query:  210 DAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNT--ARLKLQIDGVPKKKGCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLLCEGSKEKKGP 782
            +A L  +L+ LT     E    + LV G  KE KKL+S   +I+AVL DA+++Q+K + ++ WL +L    Y+++D+L +  T  AR K  + G        + P    F  K       +  ++KE+ E LD IA+++  F     +   +A +R      + E +++GREKE++E+V  L+   S  ++ P
Sbjct:    3 EAFLQVLLDNLTFFIQGE----LGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLG-------RYHPRTITFCYK-------VGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGF-VLTEPKVYGREKEEDEIVKILINNVSYSEEVP 176          
BLAST of CN186114 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-12
Identity = 48/190 (25.26%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  210 DAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKGCSFFPTA-SCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLLCEGSKEKK 776
            +A +  +L+ LTS      K ++ L+ G   E ++L+S    I+AVL DA+++Q+ ++ +  WL +L    Y+++D+L E+ T             K   F  +    +  K +  R  +  ++ ++ + L+ IA+++  F     +   +A  R    S + E +++GR+KEK+E+V  L+   S  +K
Sbjct:    3 EAFIQVVLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKT-------------KATRFLQSEYGRYHPKVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETG-SVLTEPQVYGRDKEKDEIVKILINTASDAQK 174          
BLAST of CN186114 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 45/181 (24.86%), Postives = 93/181 (51.38%), Query Frame = 3
Query:  210 DAILSPILEQLTSMAVEEAKEQVRLVTGVGKEVKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKGCSFFPTASCFACKPLVLRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLL 752
            +A +  +L+ LTS      K ++ L+ G   E ++L+S    I+AVL DA+++Q+  + +  WL +L    Y+++D+L E+ T   +       + +   + P       K +  R  +  ++ ++ + L  IA+++  F     +   +A +R    S + E +++GR+KEK+E+V  L+
Sbjct:    3 EAFIQVLLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFS-----QSEYGRYHP-------KVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETG-SVLTEPQVYGRDKEKDEIVKILI 166          
BLAST of CN186114 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  306 VKKLTSSLRVIEAVLHDAEKRQVKEETVRLWLDQLRCTCYDMEDVLGEWNTARLKLQIDGVPKKKGCSFFPTASCFACKPLV--LRRDIALKIKEINETLDDIAKQKDMFGFVVNVTNERADQRVPSISSIDESEIFGREKEKNELVDRLLCEGSKE 770
            +++L+++L  I AVL DAE++Q+    V  W+++LR   Y  ED L +  T  L+L I G                +    +      +  +++++   L+ +A Q+++ G +  +T     QR+P+ S +DESE+FGR+ +K+E++  L+ E  K+
Sbjct:   39 LERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEALRLNI-GAESSSSNRLRQLRGRMSLGDFLDGNSEHLETRLEKVTIRLERLASQRNILG-LKELTAMIPKQRLPTTSLVDESEVFGRDDDKDEIMRFLIPENGKD 193          
The following BLAST results are available for this feature:
BLAST of CN186114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RGA4_SOLBU8.276e-1628.57Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU9.151e-1530.05Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA1_SOLBU2.492e-1225.26Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU1.615e-1124.86Disease resistance protein RGA2 OS=Solanum bulboca... [more]
R13L1_ARATH2.755e-1128.03Putative disease resistance RPP13-like protein 1 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186114 ID=CN186114; Name=CN186114; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTTTGAAATGAAATANTTTCTAAATTAGCCATTTTGC
GTTGCAGGTACTATAAGAAATTGAAAGAATACGGGCAACTTTTTTCACCA
CACTTATCAGCCTCCTTCAATTTTTTTCAGCAATTAGCTAATTACAATTT
GCAACAAATTCACCATCAAATTTCTTCTCTCTCCTCTTTTTTCTTTTTCA
CCATGGGTTGATGCGATCCTTTCCCCTATCTTGGAGCAGCTGACTTCAAT
GGCTGTTGAAGAGGCGAAGGAACAAGTGAGGCTAGTAACGGGTGTCGGAA
AGGAAGTGAAGAAGCTGACCAGCAGTCTCCGCGTCATTGAAGCTGTGCTC
CATGATGCAGAGAAAAGGCAAGTGAAGGAGGAAACTGTCAGACTCTGGCT
CGATCAACTCAGATGCACATGTTACGACATGGAAGACGTGTTGGGTGAGT
GGAACACTGCAAGGCTCAAACTGCAGATCGACGGAGTGCCTAAGAAGAAG
GGATGTTCCTTCTTTCCTACTGCATCTTGCTTTGCCTGCAAACCACTTGT
CTTACGTCGTGACATTGCTCTGAAGATAAAAGAAATCAACGAAACTCTTG
ATGATATTGCCAAACAGAAAGACATGTTTGGTTTTGTTGTGAATGTTACT
AATGAGAGAGCGGATCAACGAGTACCAAGTATCTCCTCAATTGATGAGTC
CGAGATATTTGGTAGAGAAAAAGAGAAGAACGAACTCGTTGATAGGTTGT
TATGTGAGGGTAGTAAAGAAAAGAAAGGCCCCTCTATCATCTCACCC
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