CN186111

Overview
NameCN186111
Unique NameCN186111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186111_ssr574 microsatellite CN186111_ssr574:574..588. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:1..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = 2
Query:  326 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 550
            G VVS+KM K+VVVAVD L  H +Y R V+RT KFMAHDE+NQC IGD+V++  +RPLS+HK W VAE+L++++I
Sbjct:   11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSRHKRWRVAEVLERSQI 85          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_THETN (30S ribosomal protein S17 OS=Thermoanaerobacter tengcongensis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.510e-20
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            Q K  +G VVSNKMQK++VVAV+  F H +Y + VKRT K+  HDENN CN+GD V++  +RPLSK K W + E++KKA
Sbjct:    5 QRKVRIGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLSKEKRWRLVEVIKKA 83          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SYNS3 (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9311) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.510e-20
Identity = 42/78 (53.85%), Postives = 60/78 (76.92%), Query Frame = 2
Query:  311 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +K  VG VVS+KM K+VVVAV+  F H +Y + V RT+++ AHDE+N C +GDRVR+  +RPLS+HK WA+AE+L ++
Sbjct:    3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDEDNACRVGDRVRITETRPLSRHKRWAIAEVLSQS 80          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SYNPX (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH8102) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.119e-19
Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  311 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 535
            +K  VG VVS+KM+K+VVVAV+  F H +Y + V RT+++ AHDE+N C +GDRVR+  +RP+S+HK WA+AE+L
Sbjct:    3 VKERVGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNSCRVGDRVRITETRPMSRHKRWAIAEVL 77          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 550
            Q +  +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V +   RPLSK K W +  I++KAR+
Sbjct:    4 QTRIQLGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLSKTKSWTLVRIVEKARV 84          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = 2
Query:  314 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 547
            K+ +G+VVS+KM K+VVVAV+ L  H +Y + +KRT+KF AHDENN+C +GD+V +  +RPLSK K W V +IL++A+
Sbjct:    9 KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETRPLSKEKRWRVVQILERAK 86          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_ANATD (30S ribosomal protein S17 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 2
Query:  314 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 547
            K+ VG+VVS+KM K+VVVAV+R   H +Y + +KRT+KF AHDENN+C +GD+V +  +RPLSK K W V +IL++A+
Sbjct:    9 KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETRPLSKEKRWRVVQILERAK 86          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SYNPW (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH7803) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  311 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 535
            +K  VG VVS+KM K+VVVAV+  F H +Y + V RT+++ AHDENN   +GDRVR+  +RPLS+HK WAVAE+L
Sbjct:    3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDENNSVRVGDRVRITETRPLSRHKRWAVAEVL 77          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_DESOH (30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  326 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GD+V +  SRPLS+ KHW V  +++KA
Sbjct:   12 GTVVSDKMDKTVIVAVERLVKHQEYKKYVRRTAKFAAHDEQNQCAVGDKVIITESRPLSRTKHWRVVNVVEKA 84          
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SYNFM (30S ribosomal protein S17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.720e-19
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  305 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 550
            S  K+ VG V+SNKM K+VVV V+RL HH  Y+++++R +KF AHD  N C +GDRV ++ SRP+SK K W V ++L KA I
Sbjct:    6 SGRKTRVGRVLSNKMDKTVVVVVERLIHHPQYHKFIRRQNKFKAHDAQNACRVGDRVIIEESRPISKDKRWVVVQVLDKAVI 87          
The following BLAST results are available for this feature:
BLAST of CN186111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_DESAP6.586e-2161.3330S ribosomal protein S17 OS=Desulforudis audaxvia... [more]
RS17_THETN9.510e-2055.7030S ribosomal protein S17 OS=Thermoanaerobacter te... [more]
RS17_SYNS39.510e-2053.8530S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_SYNPX2.119e-1954.6730S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_PHOPR2.767e-1950.6230S ribosomal protein S17 OS=Photobacterium profun... [more]
RS17_CALS82.767e-1953.8530S ribosomal protein S17 OS=Caldicellulosiruptor ... [more]
RS17_ANATD2.767e-1955.1330S ribosomal protein S17 OS=Anaerocellum thermoph... [more]
RS17_SYNPW3.614e-1957.3330S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_DESOH3.614e-1957.5330S ribosomal protein S17 OS=Desulfococcus oleovor... [more]
RS17_SYNFM4.720e-1952.4430S ribosomal protein S17 OS=Syntrophobacter fumar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186111 ID=CN186111; Name=CN186111; organism=Citrus sinensis; type=EST; length=801bp
GCGGATCTCTCTGAACTTCCGATAGTAAGCTTTATTTAGCCGGTGAGCTA
CGGCGGTAGGTCCGTTCGCTAGAGCTATCTTAGCAAGTACCAACCTTTTA
GCTTCAAGTTTCTCACCTTAGTCACAAACACAGTCGATGAGTTTAAAGCA
ACAATAAACGAAATCCAATTTCACTCAACTCAGACACTAACCGCCCCCTG
AACCCCTGCCGCCGCCTCACCACAAGTTATTGTCGTGCGCCGTCGACCTC
CGTCAGCATCTGCCGTCACTGTAGTATCACTGTTGAAGCATAGTAATCAG
GCCGTCACAAATGAAGTCGGTGGTGGGATTGGTAGTGTCAAACAAGATGC
AAAAATCAGTAGTGGTGGCCGTTGACAGACTCTTTCACCACAAGGTTTAC
AATCGGTATGTCAAACGAACCTCCAAATTCATGGCCCACGACGAGAACAA
TCAATGCAACATCGGTGACCGAGTTAGGTTGGATCCTTCTAGACCGTTAA
GCAAGCATAAGCATTGGGCTGTTGCCGAAATTCTAAAGAAAGCACGTATC
TATGTACCACCCTCAGCGGATAATGCTGCTGCTGCTGCTGTTTCAAATAC
CCAGACTGAAGCACTGGTTTCATCATCTTAAGGTTAAGCTTTACGGGGAC
ATACAGAAAGTGAGAAGACTTGGACCTAGGTAGCAGTTTCCAAGAATTGC
TTGTAGCAATAAAACATGTCGGTTTAATGTTGCCGTTTTGGAATGAGTTA
TGCTTCTAGTTGTGTTGAATTTTTGTCAACCTTTAGACAGATGTACCTAT
G
back to top