CN186110
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.153e-21 Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = -1 Query: 330 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 554 G VVS+KM K+VVVAVD L H +Y R V+RT KFMAHDE+NQC IGD+V++ +RPLS+HK W VAE+L++++I Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSRHKRWRVAEVLERSQI 85
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THETN (30S ribosomal protein S17 OS=Thermoanaerobacter tengcongensis GN=rpsQ PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19 Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = -1 Query: 336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572 Q K +G VVSNKMQK++VVAV+ F H +Y + VKRT K+ HDENN CN+GD V++ +RPLSK K W + E++KKA Sbjct: 5 QRKVRIGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLSKEKRWRLVEVIKKA 83
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNS3 (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9311) GN=rpsQ PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19 Identity = 42/78 (53.85%), Postives = 60/78 (76.92%), Query Frame = -1 Query: 336 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 569 +K VG VVS+KM K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRVR+ +RPLS+HK WA+AE+L ++ Sbjct: 3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDEDNACRVGDRVRITETRPLSRHKRWAIAEVLSQS 80
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNPX (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH8102) GN=rpsQ PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19 Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = -1 Query: 345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569 +K VG VVS+KM+K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRVR+ +RP+S+HK WA+AE+L Sbjct: 3 VKERVGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNSCRVGDRVRITETRPMSRHKRWAIAEVL 77
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.005e-19 Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = -1 Query: 330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572 Q + +G V+S+KM KS+VVA++R+ H +Y +Y+KRT+K AHDENN+CN+GD V + RPLSK K W + I++KAR+ Sbjct: 4 QTRIQLGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLSKTKSWTLVRIVEKARV 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.005e-19 Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566 K+ +G+VVS+KM K+VVVAV+ L H +Y + +KRT+KF AHDENN+C +GD+V + +RPLSK K W V +IL++A+ Sbjct: 9 KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETRPLSKEKRWRVVQILERAK 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ANATD (30S ribosomal protein S17 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.005e-19 Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566 K+ VG+VVS+KM K+VVVAV+R H +Y + +KRT+KF AHDENN+C +GD+V + +RPLSK K W V +IL++A+ Sbjct: 9 KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETRPLSKEKRWRVVQILERAK 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNPW (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH7803) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.925e-19 Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = -1 Query: 345 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 569 +K VG VVS+KM K+VVVAV+ F H +Y + V RT+++ AHDENN +GDRVR+ +RPLS+HK WAVAE+L Sbjct: 3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDENNSVRVGDRVRITETRPLSRHKRWAVAEVL 77
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_DESOH (30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.925e-19 Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = -1 Query: 336 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 554 G VVS+KM K+V+VAV+RL H+ Y +YV+RT+KF AHDE NQC +GD+V + SRPLS+ KHW V +++KA Sbjct: 12 GTVVSDKMDKTVIVAVERLVKHQEYKKYVRRTAKFAAHDEQNQCAVGDKVIITESRPLSRTKHWRVVNVVEKA 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNFM (30S ribosomal protein S17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsQ PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19 Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 S K+ VG V+SNKM K+VVV V+RL HH Y+++++R +KF AHD N C +GDRV ++ SRP+SK K W V ++L KA I Sbjct: 6 SGRKTRVGRVLSNKMDKTVVVVVERLIHHPQYHKFIRRQNKFKAHDAQNACRVGDRVIIEESRPISKDKRWVVVQVLDKAVI 87 The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bpback to top |