CN186103

Overview
NameCN186103
Unique NameCN186103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:237..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.013e-56
Identity = 110/133 (82.71%), Postives = 116/133 (87.22%), Query Frame = -3
Query:  322 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 720
            L KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:   41 LNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.177e-55
Identity = 110/133 (82.71%), Postives = 116/133 (87.22%), Query Frame = -3
Query:  322 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 720
            L KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:   41 LIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.842e-55
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            LTKAKRYLEDV+AHKQAIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:   41 LTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.899e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   41 LNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.141e-53
Identity = 99/112 (88.39%), Postives = 104/112 (92.86%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   41 LGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41
Identity = 83/112 (74.11%), Postives = 94/112 (83.93%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            + KA RYL+DV+A KQ IPF RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:   41 IRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L KA RYL DV+  KQ IPF RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:   41 LKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.888e-37
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   41 IRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.888e-37
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   41 IRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   41 IRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of CN186103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL171_ARATH9.013e-5682.7160S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL172_ARATH1.177e-5582.7160S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL17_MAIZE5.842e-5591.0760S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU2.899e-5490.1860S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU7.141e-5388.3960S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA8.190e-4174.1160S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO6.489e-3870.5460S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_HUMAN1.888e-3768.7560S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA1.888e-3768.7560S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT2.466e-3768.7560S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186103 ID=CN186103; Name=CN186103; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTCAAGATATTCAGATTCGATTAGCTGCCTTTGGA
ATTTGGTTTGGAATGACAACTCATACACCCATATCTTTAAGCTTCAAAAT
AAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGG
ATTCTAACAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGA
TGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAAC
TCACTTCATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCT
ATGCTAAACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGG
TCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCA
ATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTA
TGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGT
AGAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTC
TTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTG
TCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGC
AGAATCGTGTGAAGGGAATGGCCTGTTTATGGGCCATAACATCCTCCAAA
TACCTCTTAGCCTTCGTCAAAG
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