DC900163

Overview
NameDC900163
Unique NameDC900163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1400
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig263 contig Csv1_Contig263:27..1429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 6.953e-63
Identity = 168/419 (40.10%), Postives = 214/419 (51.07%), Query Frame = 2
Query:  110 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDEXXXXXXXXXXXXXLRNQF-PSLPKP------VQPSLNQNFDYLXNSDQDYYNNVSILEEKPQV--NQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 1267
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E               N    S+ KP      VQ   + +  Y  NS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.473e-60
Identity = 166/409 (40.59%), Postives = 211/409 (51.59%), Query Frame = 2
Query:  110 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDEXXXXXXXXXXXXXLRNQFPSLPKPV-QPSLNQNFDYLXNSDQDYYNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 1273
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E              R+   +L KPV +P+ N +   + NS+  +  N+  +EEK QV+         N+ + G    V    +   YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQK------RSVKANLQKPVAKPNPNPSPALVQNSNISF-ENMCFMEEKHQVSNN-------NNNQFGMTNSVDAGCNGYQYFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 9.747e-49
Identity = 143/398 (35.93%), Postives = 195/398 (48.99%), Query Frame = 2
Query:  110 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDEXXXXXXXXXXXXXLRNQFPSLPKPVQPSLNQNFDYLXNSDQDYYNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADD-TPL---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 1252
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP+               +    S+ +  +P++   F+ L N++   Y + +    KP V         P++      PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVEQ--KPTVKPAFNNLANANAFVYPSANFTSNKPFVQ--------PDN-----MPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.159e-25
Identity = 72/171 (42.11%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  110 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 622
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPD 136          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.373e-18
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 2
Query:  416 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 622
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.533e-17
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  428 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 625
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNE 83          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.377e-16
Identity = 54/148 (36.49%), Postives = 69/148 (46.62%), Query Frame = 2
Query:  416 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDEXXXXXXXXXXXXXLRNQF-----PSLPKPVQPS-LNQNFDYLXNSDQDYYNNVSILEEKPQVNQYGYLGSFPN--DGE 835
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAK+NFP+                +       PS P P+ P  L   + +  +   D   N+S+       +   + G  PN  DGE
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSPPPPIAPDILLDQYGHFQSRSSDSSANLSMNMLSSSSSSLNHQGLRPNLEDGE 206          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.377e-16
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  350 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 625
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPED 135          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.088e-15
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  356 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.855e-15
Identity = 43/108 (39.81%), Postives = 53/108 (49.07%), Query Frame = 2
Query:  437 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDEXXXXXXXXXXXXXLRNQFPSLPKPVQPSLNQNFDYLXNSDQDYYN 760
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+                NQ P +     P+ NQ +    + D   +N
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYS---SNQIPQMEPQSIPNYNQYYHDASSGDMLSFN 190          
The following BLAST results are available for this feature:
BLAST of DC900163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RAP22_ARATH6.953e-6340.10Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH2.473e-6040.59Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ9.747e-4935.93Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH1.159e-2542.11Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.373e-1862.32Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH7.533e-1759.09Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH6.377e-1636.49Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH6.377e-1644.57Ethylene-responsive transcription factor ERF110 OS... [more]
EF109_ARATH1.088e-1548.31Ethylene-responsive transcription factor ERF109 OS... [more]
EF114_ARATH1.855e-1539.81Ethylene-responsive transcription factor ERF114 OS... [more]

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Properties
Property NameValue
Genbank descriptionDC900163 VSS Citrus sinensis cDNA clone VS27V82 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900163 ID=DC900163; Name=DC900163; organism=Citrus sinensis; type=EST; length=1400bp
AACTCTCTCAAGCCAACAAAAGCAAATTTTTACATTTAACCCATTCTCTT
CTAAAAATCTTTTCTCTTTAGTCCCTGAACAAACCAGAAGAAACGATAAA
CCCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTACATCCCGCCCAC
CGTGCCGGGCCGTCCAAAGAAGCTGACGGCGGAGTATCTCTGGCCGGAGC
TGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGAT
TTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACAT
TGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGC
CTTTTACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAG
CACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATA
TAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTG
ACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAA
GAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAA
AGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAGAGCTC
AGTGAAGGCAAACTCTCAGAAATCAGTTCCCAAGCTTGCCTAAGCCCGTG
CAGCCAAGTTTGAACCAGAACTTCGATTACTTGANCAACTCCGATCAGGA
TTACTACAACAATGTGAGTATTCTGGAGGAGAAACCCCAAGTGAATCAGT
ATGGATATTTGGGCTCCTTCCCTAATGATGGAGAACTAGGATTCAAACCC
TTTGTGCCAACAGCTGATGATACTCCTTTGTACTTCAACTCTGACCAAGG
CAGTAACTCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAA
AGACTCCTGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAA
TCTCAGTTTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAA
CTCTGAGAATGCTGTGCCTGTTCAGGATAACAATGGAAAGTCTCTGTCTG
ATGAGCTTTTGGCTTTTGACAATCAGGTGAAGTTCTTGCCAATGCCGTAT
CCTGAAGGAAGCTGGGAGGCCTCCCTCGATGCCTTCCTCAATGGTGACAA
CACTCAGGATGGTGGAAACTTGATGAACCTTTGGAGCTTTGATGACTTCC
CTTCTACCCTAGGGGGAGTGTATTGAGCAAACTTTAATGTGCTTGCTAGT
TTTGTAAATAAGGCTATATGTTAGTGAGTTCTCACTTTCTGATTTTTTGT
CAGATTTTAGCTCTCTTGGATCTGTTTTAATGTTTATTCACTCTGTTTCT
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