DC900161

Overview
NameDC900161
Unique NameDC900161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12833 contig Csv1_Contig12833:222..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.108e-70
Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 1
Query:  151 MGYLNSVLSSSSQVHADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            MGYLNSVLSSSSQVH+DD P SGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVK NLFSNLIRHPKFISDT +AIADAY+ TDSEFLKSEN+QNRDAGSTASTAILVGDRLL A
Sbjct:    1 MGYLNSVLSSSSQVHSDDGPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTTAAIADAYNQTDSEFLKSENSQNRDAGSTASTAILVGDRLLVA 141          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.880e-61
Identity = 115/141 (81.56%), Postives = 128/141 (90.78%), Query Frame = 1
Query:  151 MGYLNSVLSSSSQVHADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            MGY++  LS S+Q+   ++PASGGGLSQNGKFSYGYASS GKRSSMEDF+ETRIDG++GEIVGLFGVFDGHGG+RAAEYVK +LFSNLI HPKFISDTKSAIADAY+HTDSE LKSEN+  RDAGSTASTAILVGDRLL A
Sbjct:    1 MGYMDLALSYSNQMRIVEAPASGGGLSQNGKFSYGYASSAGKRSSMEDFFETRIDGIDGEIVGLFGVFDGHGGSRAAEYVKRHLFSNLITHPKFISDTKSAIADAYTHTDSELLKSENSHTRDAGSTASTAILVGDRLLVA 141          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.880e-61
Identity = 116/141 (82.27%), Postives = 126/141 (89.36%), Query Frame = 1
Query:  151 MGYLNSVLSSSSQVHADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            MGYL+  LS S+Q    ++PASGGGLSQNGKFSYGYASS GKRSSMEDF+ETRIDG+ GEIVGLFGVFDGHGGARAAEYVK +LFSNLI HPKFISDTKSAI DAY+HTDSE LKSEN+ NRDAGSTASTAILVGDRL+ A
Sbjct:    1 MGYLDLALSYSNQPQTVEAPASGGGLSQNGKFSYGYASSAGKRSSMEDFFETRIDGINGEIVGLFGVFDGHGGARAAEYVKRHLFSNLITHPKFISDTKSAITDAYNHTDSELLKSENSHNRDAGSTASTAILVGDRLVVA 141          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.703e-56
Identity = 104/125 (83.20%), Postives = 116/125 (92.80%), Query Frame = 1
Query:  199 DDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            D SP SGGGLS+NGKFSYGYAS+PGKR+SMEDFYETRIDGV+GE +GLFGVFDGHGGARAAEYVK +LFSNLI+HPKFISD KSAIA+ Y+HTDSEFLK+E++  RDAGSTASTAILVGDRLL A
Sbjct:   66 DCSPVSGGGLSENGKFSYGYASAPGKRASMEDFYETRIDGVDGETIGLFGVFDGHGGARAAEYVKQHLFSNLIKHPKFISDIKSAIAETYNHTDSEFLKAESSHTRDAGSTASTAILVGDRLLVA 190          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.064e-53
Identity = 105/141 (74.47%), Postives = 121/141 (85.82%), Query Frame = 1
Query:  151 MGYLNSVLSSSSQVHADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            MGYL+SV+ +      D SP SGGGLSQNGKFSYGYASSPGKR+SMEDFYETRID V+G+I+GLFGVFDGHGGA+ AEYVK NLFS+L+RHPKFISDTK AI DAY  TDSEFL+S+++QN+  GSTASTA+LVGDRL  A
Sbjct:    1 MGYLSSVIPT------DGSPVSGGGLSQNGKFSYGYASSPGKRASMEDFYETRIDSVDGQIIGLFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQ-CGSTASTAVLVGDRLFVA 134          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 1
Query:  196 ADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            A  SP SGGG S NGKFSYGYASSPGKRSSMEDFY+TRIDGV+GE VGLFGVFDGHGGARAAE+VK NLF+NLI+HPK  SDTKSAIA+ Y+ TDSE LK+E + NRDAGSTASTAILVGDRLL A
Sbjct:   47 AAGSPGSGGGFSANGKFSYGYASSPGKRSSMEDFYDTRIDGVDGETVGLFGVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRDAGSTASTAILVGDRLLVA 172          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.633e-36
Identity = 70/121 (57.85%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  211 ASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            ASGG   ++GK   GY+S  GKR++MEDFY+ ++  ++G+ V LFGVFDGHGG RAAEY+K NLF NL++HP+F++DTK AI++ Y  TD++FL+SE+N  RD GSTASTA+LVG  L  A
Sbjct:   99 ASGGWAREDGKLKCGYSSFRGKRATMEDFYDVKLTEIDGQAVSLFGVFDGHGGPRAAEYLKENLFENLLKHPEFLTDTKLAISETYQKTDTDFLESESNAFRDDGSTASTAVLVGGHLYVA 219          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.660e-36
Identity = 76/139 (54.68%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  178 SSSQVHADDSPA--SGGGLS-----QNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            SS  + + D  A  SGGG+S     +  KFSYGY+S  GKR++MED++ETRI  V G++V  FGVFDGHGGAR AEY+K+NLF NL+ H  FISDTK AI + +  TD E+L  E  Q ++AGSTA+TA L+GD+L+ A
Sbjct:   93 SSLMISSRDPNALFSGGGISFLAGVRTVKFSYGYSSLKGKRATMEDYFETRISDVNGQMVAFFGVFDGHGGARTAEYLKNNLFKNLVSHDDFISDTKKAIVEVFKQTDEEYLIEEAGQPKNAGSTAATAFLIGDKLIVA 231          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.364e-34
Identity = 67/120 (55.83%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  214 SGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            SGG  S++G  S GY+S  GKR+SMEDFY+ +   ++ + + LFG+FDGHGG+RAAEY+K +LF NL++HP+F+++TK AI++ Y  TDSEFL SE++ +RD GSTASTA+LVG+ L  A
Sbjct:  218 SGGWKSEDGFLSCGYSSFRGKRASMEDFYDIKSSKIDDKQISLFGIFDGHGGSRAAEYLKEHLFENLMKHPEFMTNTKLAISETYKKTDSEFLDSESHTHRDDGSTASTAVLVGNHLYVA 337          
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.766e-32
Identity = 67/126 (53.17%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  199 DDSPASGGGL-SQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXA 573
            DD    GGG  + +G  S GY S  GKRS+MEDFY+ +   +EG+ V +FG+FDGHGG+RAAEY+K +LF+NL++HP+F++DTK A+ + Y  TD  FL+SE +  RD GSTAS A+LVG+ L  A
Sbjct:   84 DDGGYIGGGWKNDDGSLSCGYCSFRGKRSTMEDFYDIKASTIEGQAVCMFGIFDGHGGSRAAEYLKEHLFNNLMKHPQFLTDTKLALNETYKQTDVAFLESEKDTYRDDGSTASAAVLVGNHLYVA 209          
The following BLAST results are available for this feature:
BLAST of DC900161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
P2C59_ARATH8.108e-7092.91Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C71_ARATH6.880e-6181.56Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH6.880e-6182.27Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C10_ORYSJ8.703e-5683.20Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C45_ORYSJ1.064e-5374.47Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C59_ORYSJ2.370e-5380.95Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C13_ORYSJ2.633e-3657.85Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C11_ARATH7.660e-3654.68Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C52_ORYSJ9.364e-3455.83Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C76_ARATH1.766e-3253.17Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900161 VSS Citrus sinensis cDNA clone VS27V81 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900161 ID=DC900161; Name=DC900161; organism=Citrus sinensis; type=EST; length=610bp
GATAATTCGTGACATTGAAATGATCTAACGAATGTGCAATCACCTATTGT
AACTAACCAAAACGCTGTCGCTGCTGTAGTTATTGCTTTCGTTGTTATTA
ATTTATTTTCTCTTCCGAGTGGTTAACGAATTGGAACTTGAAGCGAAACC
ATGGGGTATTTGAACTCGGTGTTGTCATCTTCAAGCCAGGTTCACGCCGA
TGATTCGCCGGCTAGCGGCGGGGGCCTTAGTCAGAACGGAAAGTTCAGCT
ACGGATATGCGAGTTCTCCTGGCAAGAGGTCTTCTATGGAAGATTTTTAT
GAGACCAGAATTGATGGCGTCGAAGGAGAGATAGTAGGCCTCTTTGGAGT
TTTTGATGGTCATGGGGGTGCACGAGCTGCTGAGTATGTGAAACACAACC
TCTTCAGCAATCTGATCAGGCATCCAAAGTTCATATCTGATACCAAATCG
GCAATAGCTGATGCATACAGCCACACAGACTCGGAATTTCTGAAGTCAGA
AAACAATCAAAACAGGGATGCTGGATCTACTGCTTCCACTGCCATCCTTG
TTGGTGATCGCTTACTTGNTGCAATGTGGTGCTCAGAGCTGTATATGCAG
GGCGGTATGC
back to top