CN186074

Overview
NameCN186074
Unique NameCN186074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186074_ssr467 microsatellite CN186074_ssr467:467..478. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13481 contig Csv1_Contig13481:109..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186074 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:  630 KTAADKRFKTLPPSEALPRNETIGGYIFVCHNDTMAENLKRQLFG 764
            K   +KRFKTLPP+E+LPRNET+GGYIFVC+NDTM ENLKRQLFG
Sbjct:   52 KNGVEKRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFG 96
The following BLAST results are available for this feature:
BLAST of CN186074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B2_DAUCA2.257e-1580.00B2 protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186074 ID=CN186074; Name=CN186074; organism=Citrus sinensis; type=EST; length=765bp
GCAGGGTAGAGATTAGGGATATACAAAGAAAAAAATACCACATTCGTCCC
GGATCATACATAAATTTTCTGTTTTCTCGTGAATTAGTGTCTGAGATGGA
GAACAATCAGCAGTCGTTTTGGCAATTCAGTGATCAACTGAGGGTGCAAG
CATCAAACTTGGCTAATCTGTCACTCAACGACTCGATCTGGAGCAACAAT
TATGGGTCGAAGAGGCCGGATGAAAGGAAGAATTTCGACATCAGAGTCGG
CGGTCAAGTGAATGTGAATCCATTCACTAAAGGGTCTGATTTGAACGCCT
TCGATGGTGGTTACAAGAGTATCAGCAGCAACTACAACGATATTGGCCTA
GGCCCTATCGGCCAGATTGTGGCCCCTGCCTCGGCCTCTCAAAAGAATGT
TGGGATCAACGGTGGATTCAACAAAGGGATTTATTCAAAGTCAGGTCATT
TTGGTCTTAGCACCATCAACAACAACAACATCAACAGTTATATGAATGTT
AATTTGAAGGGGAATAGGAATAAGGAAGAGCATGATCATCATGGACTTGG
AAGCAAGAGTGGCAAGAAGAACAGCAACAAGAAGAACAATAACAAAGATG
GTGACAATAATTCCGATAATAAGGACACTAAGACTGCTGCTGATAAGAGG
TTCAAGACTCTCCCACCTTCGGAGGCTTTGCCTAGAAACGAAACCATTGG
TGGCTATATTTTTGTCTGCCACAATGATACCATGGCTGAGAATCTCAAAA
GACAGCTCTTTGGAT
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