CN186073

Overview
NameCN186073
Unique NameCN186073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13481 contig Csv1_Contig13481:836..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186073 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.574e-63
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = -2 
Query:  341 TMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEE 700
            TM ENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHG+FEAASFGGTNIDPTAWEDKK  GESRFPAQVRV+TRKICEPLEEDSFRPILHHYDGPKFRLELN+PEAISLLDIFEE
Sbjct:   85 TMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204
The following BLAST results are available for this feature:
BLAST of CN186073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B2_DAUCA5.574e-6395.00B2 protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186073 ID=CN186073; Name=CN186073; organism=Citrus sinensis; type=EST; length=701bp
TGCAAATAAAAACCGGTATTATACCAGACCTTTAGAGAAAGTCTTTATAA
TTTGCTCTTATTTATGTACCCTTTAAACAAAAGAACAAAAAGGACAAACA
CCCAGCAACAGCCTCCTCACAAAATGTTTACATCAAGGACGCTGTGCATA
TTCAGCTCTCATACTTCCCCTCACATACTCTCGCTAAACTATCAATATAA
TGAAGGCCACAAACTCATAAATTCTTTCCCTAATTGTTTCATCAAACCAC
TTTTATGCTGTGTAACTTCACTAACTGGTACTTGTATCGGTAAGCTTTTG
TTTCGTATGGTCGTATTGCAGCAATTGCTCAAGAGTCTTGTTCTTCAAAT
ATGTCCAAGAGAGAAATTGCCTCAGGCACATTTAGTTCAAGGCGGAACTT
GGGGCCATCATAGTGATGGAGAATTGGCCTGAAGGAATCCTCTTCAAGCG
GTTCACAGATTTTCCGTGTAACAACCCGGACCTGAGCTGGGAATCGTGAT
TCGCCAGGGCATTTCTTGTCTTCCCAGGCTGTAGGATCAATATTTGTACC
TCCAAAGCTAGCAGCCTCAAAAATTCCATGCAGCTGGTGGGTGGAATAGT
TATAAAGGAAAAGGGGCAAGCCAGGGGTTATAGCTCTCACTGAATCCCTG
TAACGTGGAGGCAATCCAAAGAGCTGTCTTTTGAGATTCTCAGCCATGGT
A
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