DC900154

Overview
NameDC900154
Unique NameDC900154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900154 vs. ExPASy Swiss-Prot
Match: DPOE3_RAT (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   40 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 342
            PE   LP  ++ R++K+ L    PD  +++ K+A  A   +A +F+ Y ++ AN+   + KR+T+NA DVL A+EE++F  FV PL+++L+ +R++  GK+
Sbjct:    5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
[Close]
BLAST of DC900154 vs. ExPASy Swiss-Prot
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   40 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 342
            PE   LP  ++ R++K+ L    PD  +++ K+A  A   +A +F+ Y ++ AN+   + KR+T+NA DVL A+EE++F  FV PL+++L+ +R++  GK+
Sbjct:    5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
[Close]
BLAST of DC900154 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   40 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 342
            PE   LP  ++ R++K+ L    PD  +++ K+A  A   +A +F+ Y ++ AN+   + KR+T+NA DVL A+EE++F  FV PL+++L+ +R++  GK+
Sbjct:    5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
[Close]
BLAST of DC900154 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   40 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 342
            PE   LP  ++ R++K+ L    PD  +++ K+A  A   +A +F+ Y ++ AN+   + KR+T+NA DVL A+EE++F  FV PL+++L+ +R++  GK+
Sbjct:    5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
[Close]
BLAST of DC900154 vs. ExPASy Swiss-Prot
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 36/101 (35.64%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   40 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 342
            PE   LP  ++ R++K+ L    PD  +++ K+A  A   +A +F+ Y ++ AN+   + KR+T+NA DVL A+EE++F  F+ PL+++L+ +R+   GK+
Sbjct:    5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKK 100
The following BLAST results are available for this feature:
BLAST of DC900154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DPOE3_RAT3.050e-1436.63DNA polymerase epsilon subunit 3 OS=Rattus norvegi... [more]
DPOE3_PONAB3.050e-1436.63DNA polymerase epsilon subunit 3 OS=Pongo abelii G... [more]
DPOE3_HUMAN3.050e-1436.63DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]
DPOE3_BOVIN3.050e-1436.63DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
DPOE3_MOUSE6.794e-1435.64DNA polymerase epsilon subunit 3 OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionDC900154 VSS Citrus sinensis cDNA clone VS27V73 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900154 ID=DC900154; Name=DC900154; organism=Citrus sinensis; type=EST; length=735bp
CGGCACGACAATCAGCAAATGGAAACAGAGAAAGTAGTACCGGAAGCAGA
AGAGCTGCCGAAGACTATCGTGCGCCGTGTGGTGAAGGATAAGCTGCACA
ATTGCTCTCCCGATACCGACATCTCCGTTCACAAAGACGCGCTCCTTGCT
TTCTGCGAAAGCGCCCGCATCTTCATCCATTACCTCTCCGCCACGGCTAA
TGACATATGCAAGGAGTCAAAGAGGCAAACGATTAACGCTGAGGATGTGT
TAAAAGCAATTGAAGAAATTGACTTTACTGAGTTTGTAGACCCTCTTAGA
GACTCCCTTGATGAATTTAGGCAGAAGAATGCTGGAAAGAGAGCCGGAAC
ATCGAAGTCAAAAGAAGAGAAAAAGAAACAGAAAGTAGAAGGTGAGGCAT
CAAAGAAAAGTTGTGGTAAAACTGAAAAAGATAAAAAGAATGAAGAGTAG
GATGATGCTGGTGGAAAGGAGTGAGCAAGAACATTATTATCTACATTCCA
AGAAAACTGAGTGTAGAATACTAATCAAGACGAAATCTCTATAAGATGTA
ATCTCTATTGTAGGTTGATCTTGTAAGATTAAACAAGCATCAATTTTTCT
ATTTGCTGCAGAGGTGGCTAAAGAGAGGCCATTTGTCTTAGACACTGAAT
TGCGCCTGTAAAATTTACATTTTTTCTTTACGAGATACTACAATATTTTT
TGGTTATCTCAACATTCTAGTCATTTTGCTGGATG
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