DC900153

Overview
NameDC900153
Unique NameDC900153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:304..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC900153 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 2 
Query:   92 VKDIXASVNWLKX--NGSKKVGVTXYCMXGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 541
            + D  A++ +++     + KVG+T +C  G ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +           +   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  143 MNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278
The following BLAST results are available for this feature:
BLAST of DC900153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YGHX_ECOLI2.086e-1230.92Putative uncharacterized protein yghX OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionDC900153 VSS Citrus sinensis cDNA clone VS27V72 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900153 ID=DC900153; Name=DC900153; organism=Citrus sinensis; type=EST; length=839bp
AATCCTGATCAGGCNCTANCCAAATTTANTCGGGAAAGGTGGTTGGATAC
TGCTAAGCCCAGCNCTGATGAGTGTCTTGATGGCCAGGTCCGTCAAGGAT
ATCCNCGCTTCAGTTAATTGGCTTAAGNCAAATGGTTCCAAGAAGGTTGG
CGTGACTGNATATTGCATGGNAGGTGCTCTCGCTATTGCAAGTTCTGTCT
TAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGGTTCCCCCACCT
GAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAAGCTCATTTTGG
GGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGAAAACTGCCAAAGCAT
TGGAGGAAAAGCTGAAAGCATCTGGTGTTCCATATGAGGTACATATTTAT
CCTGGCAGTGCACATGCTTTCATGAACATTTCTCCGGATGGAGTGAAGAG
GAGGAAAGAAATGGGAATGGATGATCACGATCCAGCCGCAGTTGAGCTGG
CGTGGTCTCGCTTCCAATCATGGATGACCCGCTACTTATCTGCTTAAGTA
ATTCACTAGTATTATGAATCTATGGTGTTTACCTCGCTTCCATCATTAAA
TAAATAACTGTGTGTATGCCTCTACTCTACATATAACACAGCTGCAAGTA
TCCTTTTGTTTCCAAAGGGGTTCGATACTGGGATATGTCTGTTTGTAGTT
TGCCTATATTGTATGTTTGCTGAAGGCTTATTGATTATCACAAAGGTGAA
CTTCACAACTTGTGTGAATGGGGACCTACACGGTTGGATTAAAACAGNCT
TTGGCAGAGAAGGTNAACTTCTCTGGACCAAAAGATTCA
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