CN186066

Overview
NameCN186066
Unique NameCN186066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5017 contig Csv1_Contig5017:17..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.039e-58
Identity = 126/236 (53.39%), Postives = 166/236 (70.34%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN D+ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNRDKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.024e-58
Identity = 125/236 (52.97%), Postives = 166/236 (70.34%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.024e-58
Identity = 125/236 (52.97%), Postives = 166/236 (70.34%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.024e-58
Identity = 125/236 (52.97%), Postives = 166/236 (70.34%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.024e-58
Identity = 125/236 (52.97%), Postives = 166/236 (70.34%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGAVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.830e-56
Identity = 120/247 (48.58%), Postives = 158/247 (63.97%), Query Frame = -2
Query:  149 CEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPM---------------------------------SKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 790
            CE F+SYYL  H GR L WQTNMG+A+IKA F   + HEL VS+YQM +L+LFN+  +L+++EI   T IP  DLKR L +L   + K + R+ P                                  SK I E D F  N KF SK ++VK+  VV QKE+  E++ETR +V+EDRK QIEA+IVRIMK+R+ L+H+N+++EV KQLQSRF+ NP  +KKRIESLIER++LER   DRK+Y Y+A
Sbjct:  525 CEAFKSYYLSNHNGRLLLWQTNMGTAEIKANF-PSKSHELQVSSYQMVILLLFNDQSKLTFKEIADQTGIPTIDLKRNLLALTNPKNKILDRELPSTTSSTTTTTTTATSSSTSTSPSSSSSSISTPTPSKSIDESDVFAFNTKFKSKLFRVKVMAVV-QKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 101/215 (46.98%), Postives = 143/215 (66.51%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L E F+++YLG H+GR+L WQ+ +G   +KA F +G+K EL VS +Q  VL++FN  +  S  EI+QAT I   +L+R LQSLAC + + VL K P  KDI + D F  ND F  K +++KI  +   KE+  E+  T +RV +DR+ QI+AAIVRIMK R+ L HN +++EV  QL  +F   P ++KKRIESLI+RD++ERD  +   Y Y+A
Sbjct:  686 LQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKK-ELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKAR-VLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQI-QMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.137e-47
Identity = 107/245 (43.67%), Postives = 152/245 (62.04%), Query Frame = -2
Query:  149 SALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF--------------------GKGQKHE------LNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKN--VLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 799
            S   E F  YY   HTGR+L+  T +G+AD+KATF                    G+  K        L V+T+QM +L+ FN+ +R+S +++    +IP  +LKR LQSLA  +     ++RK      I   D F VND F SK  +VK+  V  + ESEPE +ETRQ+VE+DRK ++EAAIVRIMK+R+ L+HNN++AEVT+QL+ RF+ +P  IK+RIE+LIER++L RD  D + Y+Y+A
Sbjct:  533 SVAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.529e-46
Identity = 99/215 (46.05%), Postives = 144/215 (66.98%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L E F+++YLG H+GR+L WQT +G A +KA F +G+K E  VS +Q  VL++FN  D  S+ EI+ AT I  S+L+R LQSLAC + + VL K P  K++ + D F  N +F  K +++KI   +  KE+  E+  T +RV +DR+ QI+AAIVRIMK R+ L HN +++E+  QL  +F   P ++KKRIESLI+RD++ERD  +   Y Y+A
Sbjct:  550 LQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.529e-46
Identity = 96/220 (43.64%), Postives = 144/220 (65.45%), Query Frame = -2
Query:  149 ALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR---LSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQK-ESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 796
            A  ++F  +YL  HTGR+L W  +MGSAD++  F K +K++LNVST    +L+LF +      L + EI + T I   DLKR LQSLAC + K +L K+P  +++   D F+ N+ F S   ++KI TV   + E + E++ T ++V+E RK Q +A IVR+MK R+V +HN ++AEVT+QL  RF  +P  IK+RIE+LIER++L+R   + ++Y YLA
Sbjct:  568 AQIDQFTDFYLSKHTGRKLLWYPSMGSADVRVNF-KDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIEVGDLKRNLQSLACAKYK-ILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
The following BLAST results are available for this feature:
BLAST of CN186066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL3A_XENLA1.039e-5853.39Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_XENTR3.024e-5852.97Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_MOUSE3.024e-5852.97Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN3.024e-5852.97Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL3B_XENLA3.024e-5852.97Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_DICDI2.830e-5648.58Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL4B_HUMAN2.402e-4746.98Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL3_CAEEL3.137e-4743.67Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL4A_HUMAN4.529e-4646.05Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL3_SCHPO4.529e-4643.64Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186066 ID=CN186066; Name=CN186066; organism=Citrus sinensis; type=EST; length=800bp
CTTTTTTTTGGAAAAACGGGTTATCTTGAAACAAACTGAGATTGCCCACT
TTTTAAAACAATTTTCGACTTACCAACTAACGTACAAATTGAATTGTTTG
CGCTAAAATTTCCTCAAGAAACAAGTAATCTTCTCATGCCAATCTTTAGG
CAAGATACCGATACAATTTTCTGTCTACATTATCCCTCTCCAAGAAATCC
CTTTCAATGAGGGACTCAATCCGTTTTTTAATCTCCGTGGGGTTTGCCAG
AAACCGTGACTGCAACTGCTTTGTGACCTCAGCAATTATGTTGTTATGAT
CGAGTACTCTCCTTGATTTCATGATTCTAACGATGGCAGCTTCAATCTGA
GGCTTCCTGTCCTCCTCCACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTC
TGACTCCTTTTGTGCAACCACAGTTCCTATCTTTACCTTATAGAATTTGC
TCGTGAACTTGTCATTGACAAAGAATGCATCATCTTCACCAATGTCTTTA
CTCATAGGTTCTTTCCGAAGAACATTCTTCCCCCTCACACAAGCCAGAGA
TTGCAGGCACCTTTTCAAGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTA
TTTCCCTGTAGCTAAGCCGATCAGCATTGTTAAACAGCATGAGAACACAC
ATTTGGTATGTGGAGACATTCAGCTCATGCTTCTGACCTTTACCAAAGGT
TGCTTTTATATCTGCTGAGCCCATGTTGGTTTGCCAGGACAATCTCCGAC
CAGTATGAGTTCCAAGGTAGTATGATCTAAATTTCTCACACAGAGCTGAC
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