DC900148

Overview
NameDC900148
Unique NameDC900148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9396 contig Csv1_Contig9396:747..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900148 vs. ExPASy Swiss-Prot
Match: CML36_ARATH (Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.405e-23
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   22 SCEPACEP-ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 246
            S +PA +  ELKETF+FFDAD DG I+A+EL  VF+ +GDE CTLDDC+ MIA VD++GDGFVCF +FSRMM+LQR
Sbjct:  134 SLDPARDSTELKETFEFFDADRDGLISADELLRVFSTIGDERCTLDDCKRMIADVDEDGDGFVCFTEFSRMMDLQR 209          
BLAST of DC900148 vs. ExPASy Swiss-Prot
Match: CML35_ARATH (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.638e-19
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 SRLGNSSCEPACEPE-LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 234
            SR+  +S E + E E L+E F+ FD D +GKI+AEEL  VF  +GDE CTL++C  MIA VD NGDGFVCF+DF RMM
Sbjct:  130 SRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIATVDGNGDGFVCFDDFCRMM 207          
BLAST of DC900148 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.718e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   28 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 234
            E A E EL+E F  +DAD +GKI+A EL  V  +LGD+ C++ DC  MI  VD +GDG V F++F +MM
Sbjct:   84 EAASEAELREAFRMYDADSNGKISARELHRVLRQLGDK-CSVADCSRMIRSVDADGDGCVNFDEFKKMM 151          
BLAST of DC900148 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    7 RLGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 234
            ++ + S   +   +LKE FD +D D +G+I+A EL  V   LG++ C++ DC+ MI  VD +GDG V FE+F +MM
Sbjct:   77 QISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEK-CSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
The following BLAST results are available for this feature:
BLAST of DC900148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CML36_ARATH8.405e-2367.11Probable calcium-binding protein CML36 OS=Arabidop... [more]
CML35_ARATH5.638e-1958.97Probable calcium-binding protein CML35 OS=Arabidop... [more]
CML18_ORYSJ8.718e-1250.72Probable calcium-binding protein CML18 OS=Oryza sa... [more]
CML23_ARATH2.537e-1142.11Probable calcium-binding protein CML23 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionDC900148 VSS Citrus sinensis cDNA clone VS27V68 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900148 ID=DC900148; Name=DC900148; organism=Citrus sinensis; type=EST; length=372bp
ATAAGCCGGCTCGGGAACTCGTCTTGCGAGCCGGCTTGTGAACCGGAGCT
CAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCACGG
CCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGCACG
TTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAAACGGGGATGG
GTTCGTCTGCTTCGAGGACTTTTCAAGGATGATGGAGTTGCAGAGATGAT
CGTGATTATATTGTTATCTATACATAAATCAATATGTTTTTAAAACACCC
CGTGATGATAATGATGATCATGTGATTATGTTTCCTCCTCTTGATCGTAT
AAAACCAAAGTCGTTAATTTTT
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