DC900144

Overview
NameDC900144
Unique NameDC900144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig472 contig Csv1_Contig472:420..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900144 vs. ExPASy Swiss-Prot
Match: PX11D_ARATH (Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.141e-56
Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 ALLPTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP 429
            ALL TFLFLDQ+VWLGRSGIYKNKERAELLGRISLFCWMGSSVC+TLVE+GE+GRLS+SM              +E Y+AKLKKSNERSLAL+KSAMDIVVA GLLQLAP K+TPRVTGAFGF+TS+ISCYQLLP   K K P
Sbjct:   94 ALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPKIKTP 236          
BLAST of DC900144 vs. ExPASy Swiss-Prot
Match: PX11C_ARATH (Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.489e-53
Identity = 103/141 (73.05%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 ALLPTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAK 423
            ALL TFLFLDQ+VWLGR+GIYK+KERAE+LGRISLFCWMGSSVC++LVE+GELGRLS S+              NEQY+AK++KSNERSLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQLLP+  K+K
Sbjct:   93 ALLSTFLFLDQIVWLGRTGIYKDKERAEILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233          
BLAST of DC900144 vs. ExPASy Swiss-Prot
Match: PX11E_ARATH (Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.783e-51
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:    1 ALLPTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP 429
            ALL TFLFLDQ+VWLGRSGIYKNKER ELLGRISLFCW+GSSVC++ VE+GELGRLS+SM              +E Y+AKL+KSN+R+LAL+KS+MDI+VA+GLLQLAPK ++PRVTGAFGF TSLISCYQLLP+  K K P
Sbjct:   93 ALLSTFLFLDQIVWLGRSGIYKNKERTELLGRISLFCWLGSSVCTSAVEIGELGRLSSSM----KKMEKELKADDELYRAKLQKSNDRTLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSRPKLKTP 231          
BLAST of DC900144 vs. ExPASy Swiss-Prot
Match: PX115_ORYSJ (Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.370e-48
Identity = 92/141 (65.25%), Postives = 113/141 (80.14%), Query Frame = 1
Query:    1 ALLPTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAK 423
            ALL TFLFLDQ+VW GR+GIYKNKERAE L +I+ +C++GS+ C++++E+ EL RLS SM              NEQYQ KL+K NER LAL+KS++DIVVA+GLLQLAPKKVTPRVTGAFGF +SLI+CYQLLPAP K+K
Sbjct:   93 ALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233          
BLAST of DC900144 vs. ExPASy Swiss-Prot
Match: PX111_ORYSJ (Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.159e-48
Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    1 ALLPTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA---PVKAKA 426
            ALL TFLFLDQ VWLGR+GIYKNKER + + RISL+CWM SSVC+ LVELGEL RLS SM              N+QY++K+K+S+ER LALVK+AMD+VVAVGLLQL+PKK+TPRVTGAFGFVTSLISCYQ LP+    +K KA
Sbjct:   93 ALLSTFLFLDQFVWLGRTGIYKNKERTDRIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDERLLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIKVKA 237          
The following BLAST results are available for this feature:
BLAST of DC900144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PX11D_ARATH3.141e-5676.22Peroxisomal membrane protein 11D OS=Arabidopsis th... [more]
PX11C_ARATH2.489e-5373.05Peroxisomal membrane protein 11C OS=Arabidopsis th... [more]
PX11E_ARATH1.783e-5170.63Peroxisomal membrane protein 11E OS=Arabidopsis th... [more]
PX115_ORYSJ5.370e-4865.25Peroxisomal membrane protein 11-5 OS=Oryza sativa ... [more]
PX111_ORYSJ9.159e-4867.59Peroxisomal membrane protein 11-1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionDC900144 VSS Citrus sinensis cDNA clone VS27V64 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900144 ID=DC900144; Name=DC900144; organism=Citrus sinensis; type=EST; length=628bp
GCATTATTGCCAACTTTCTTATTTCTTGATCAAGTCGTTTGGCTTGGCAG
ATCAGGCATCTACAAGAACAAAGAGCGTGCAGAATTGCTTGGTCGGATAT
CTCTTTTTTGTTGGATGGGTTCCTCAGTTTGTAGCACATTAGTTGAGCTT
GGAGAGCTTGGGAGGCTTTCTACATCAATGAAAAAGTTAGAGAAGGAGCT
TAAGGACAGTGATAAGCATAAAAATGAACAATACCAAGCTAAACTTAAAA
AATCAAATGAGAGGTCTCTAGCACTTGTCAAATCAGCCATGGACATTGTG
GTGGCGGTTGGGCTGCTTCAATTGGCCCCCAAGAAAGTTACTCCTCGTGT
AACAGGAGCATTTGGATTTGTTACCTCTCTCATCTCTTGTTATCAGCTAC
TTCCAGCTCCAGTAAAAGCCAAGGCACCATGAATGGAAAAGGCGGCTTTG
CTGCACAAGCTTCAGTGACATTAAAATAATTATTCGTAGTGGTTACATAA
GTCAGATGTTGGTGTATGCTTTTGCTCAATTCGCCACCTTATAAGGTGAC
ATTAAAATATTCCACTTGTTGTCAAGATCACTCTGCTCTTTTAAAGTAGT
AATAATACCCCTGGCTTGTCTTTTCATT
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