CN186055

Overview
NameCN186055
Unique NameCN186055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186055_ssr51 microsatellite CN186055_ssr51:51..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2519 contig Csv1_Contig2519:24..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 6.293e-87
Identity = 157/199 (78.89%), Postives = 172/199 (86.43%), Query Frame = -2
Query:  162 FTGTFPAIAAQCLQRLPSSNN-KFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDCTN 755
            FTG FP+IAAQCLQ+LPSS+N KFTYNCDHHTFNFLVEDGYAYCVVAK+S+SKQISIAFLER++ADFKKRYGGGKA TAIAKSLNKEFGP+MKEHM YI+DHAEEIEKLIKVKAQVSEVKSIMLENIDKA+DRGEN+  L DKTENLR QAQ YKK GTQ+RRK+WYQNMKIK                 VCHGF+CT+
Sbjct:   24 FTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNCTD 222          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.918e-69
Identity = 126/196 (64.29%), Postives = 148/196 (75.51%), Query Frame = -2
Query:  168 FTGTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDC 755
            F G F +IAAQCLQ+LPSSNNKFTYNCD HTFN+LVEDG+ YCVVA +S  +QI ++FLER++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW QNMKIK                 VCHGF C
Sbjct:   24 FKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.009e-68
Identity = 125/197 (63.45%), Postives = 150/197 (76.14%), Query Frame = -2
Query:  165 FTGTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDCT 755
            F G F A+AAQCLQ+LPSSNNKFTYNCD HTFN+LVE+G+ YCVVA ESV +QI +AFLER++ DF KRYGGGKA TA A SLN+EFG  +KEHM+Y +DH +EI KL KVKAQV+EVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+IRRKMW++NMKIK                 VC GF CT
Sbjct:   89 FKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKCT 285          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.836e-68
Identity = 124/196 (63.27%), Postives = 149/196 (76.02%), Query Frame = -2
Query:  168 FTGTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDC 755
            F G F +IAAQCLQ+LPSSNNKFTYNCD HTFN+LVE+G+ YCVVA +S  +QI +AFLER++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW+QNMKIK                 +C GF+C
Sbjct:   24 FKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNC 219          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 7.234e-67
Identity = 120/197 (60.91%), Postives = 147/197 (74.62%), Query Frame = -2
Query:  165 FTGTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDCT 755
            F G F ++AAQCLQ+LPSSNNKFTYNCD HTFN+L ++G+ YCVV  ES  +QI +AFLER++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y  DH EEI KL KVKAQV+EVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+++RK+W++NMKIK                 VCHGF CT
Sbjct:   24 FKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKCT 220          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.464e-51
Identity = 105/196 (53.57%), Postives = 130/196 (66.33%), Query Frame = -2
Query:  168 FTGTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDC 755
            F G F ++AAQ L+ LPSSNNKFTYNCD HTFN LVE+G+ YCVVA +S  ++I +AFLER++ DF KRYGG KA T  A SLNKEFG  +KEHM+Y +DH +EI  L K KAQVSEVKS+M+ENI+K + RG   + L         Q QA+    TQ++RK W+QNMKIK                 VC GF+C
Sbjct:   24 FKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSS----ESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNC 215          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.115e-50
Identity = 96/217 (44.24%), Postives = 142/217 (65.44%), Query Frame = -2
Query:  162 FTGTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGG-KADT------------------AIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDCTN 755
            ++G F  IA QCLQ+LP++++K+TY+CD HTFNFLV++G+ + VVA ES  + +   FLER++ DFKKRY    K D                   ++A +L++EFGPI+KEHM+Y + H EE+ KL K+KAQ++EVK IM++NI+K +DRGE I+ L DKTENL+ QA ++++ G Q+RRKMW Q++++K                  C GF C++
Sbjct:   24 YSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKCSS 240          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.687e-23
Identity = 56/196 (28.57%), Postives = 103/196 (52.55%), Query Frame = -2
Query:  162 GTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDCTN 749
            G F  +  Q L ++PS NNK TY+  ++ F+++ +D   Y  +  +   +  + +FL  ++  F+  YG  +A TA+  ++N EF  ++   +K+  ++ + ++K+++ +AQV E+K IM+ NID    RGE ++ L DKTENL + +  +K     + R M  +N+K+                  +C GF   N
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGFTWPN 216          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.878e-23
Identity = 58/198 (29.29%), Postives = 102/198 (51.52%), Query Frame = -2
Query:  162 GTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEE--IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXVCHGFDCTN 749
            G F  +  Q L ++PS NNK TY+  ++ F+++ +D   Y  +  +   +  +  FL  ++  F+  YG  +A TA+  ++N EF  ++   +K+   H+E   ++K+++ +AQV E+K IM+ NID    RGE ++ L DKTENL + +  +K     + R M  +N+K+                  +C GF   N
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKH---HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGFTWPN 216          
BLAST of CN186055 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 54/171 (31.58%), Postives = 97/171 (56.73%), Query Frame = -2
Query:  243 GTFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEE--IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKI 749
            G F  +  Q L ++PS NNK TY+  ++ F+++ +D   Y  +  +   +  +  FL  ++  F+  YG  +A TA+  ++N EF  ++   +K+   H+E   ++K+++ +AQV E+K IM+ NID    RGE ++ L DKTENL + +  +K     + R M  +N+K+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKH---HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 189          
The following BLAST results are available for this feature:
BLAST of CN186055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA724_ARATH6.293e-8778.89Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA721_ARATH5.918e-6964.29Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA725_ARATH1.009e-6863.45Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH3.836e-6863.27Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH7.234e-6760.91Putative vesicle-associated membrane protein 726 O... [more]
VA723_ARATH1.464e-5153.57Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH2.115e-5044.24Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAMP7_MOUSE1.687e-2328.57Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_BOVIN2.878e-2329.29Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_HUMAN4.909e-2331.58Vesicle-associated membrane protein 7 OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186055 ID=CN186055; Name=CN186055; organism=Citrus sinensis; type=EST; length=756bp
GCGGGTCAAGTGTTATTTGACATGAACGATGGTACAATACATGATACAAA
TCTCTCTCTCTCTCTCTTTAATTTCAGTGACCGACCAAAACTCCCCTACA
GAACAGAAGCTGTTGAAGAAGCTCAGTTTTGTACATCGTTGTGAGAAATA
AAGAGTCACTAGTTGGTGCAATCGAATCCATGGCAAACAGAAAGCCATAT
TATGAGGACTAGAATTAGCAAGATTCCGAGAACGACTAACTTTATCTTCA
TGTTTTGATACCACATTTTACGCCGGATTTGAGTTCCCGCTTTCTTGTAC
GCCTGGGCCTGCTCACGCAAGTTTTCGGTTTTGTCGGCAAGATTCTGAAT
GTTTTCACCTCTGTCCACAGCCTTGTCGATATTCTCCAACATTATGCTTT
TGACTTCTGAAACTTGAGCCTTTACTTTTATTAGCTTTTCAATCTCTTCG
GCGTGGTCAATGATATATTTCATGTGCTCTTTCATAATTGGCCCAAATTC
CTTGTTAAGACTCTTGGCAATAGCAGTATCTGCTTTACCACCGCCATACC
GTTTCTTAAAGTCTGCTCTCATACGCTCCAAAAAAGCAATAGAGATCTGC
TTGCTAACAGATTCTTTGGCAACAACGCAGTAGGCGTAACCATCTTCAAC
GAGGAAGTTGAAAGTGTGGTGGTCGCAATTGTAAGTGAACTTGTTGTTAG
AAGAAGGCAGCCTCTGCAAGCACTGAGCTGCAATCGCCGGGAAAGTGCCA
GTGAAC
back to top