CN186052

Overview
NameCN186052
Unique NameCN186052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:260..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186052 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.237e-28
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:   22 MLEKLWDHVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 384
            +L+KLWD +VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CN186052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN9.237e-2852.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186052 ID=CN186052; Name=CN186052; organism=Citrus sinensis; type=EST; length=788bp
CAGCTAAATTGTAATTTAAAGATGCTAGAGAAGCTTTGGGACCATGTTGT
GGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCA
CAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGC
AAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGAC
GCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGA
GGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCA
GAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTG
GCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACTAGTGGATGATAC
GCTACAGCGATGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGT
TGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGT
CCTTGTCGTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAA
GTTTGGTTTTAAAATGCTGCTGACTAAAAGTAAATTAAAGACTGTGATGT
TTTTATATCATATAATTTAATAATTGTATGTGATGTGAGGATTGCTAAGC
TGTGGGCGGAGATGAAAGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTT
GATTGTCATTTTGTAAGAGCCAAGATCATCCCTTCGTGGACGGTCGTGAT
GAGCATATATGTTTTATTATTAATAAATAAGTTGCTTC
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