CN186044

Overview
NameCN186044
Unique NameCN186044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig353 contig Csv1_Contig353:25..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186044 vs. ExPASy Swiss-Prot
Match: LTI65_ARATH (Low-temperature-induced 65 kDa protein OS=Arabidopsis thaliana GN=LTI65 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.499e-23
Identity = 82/227 (36.12%), Postives = 117/227 (51.54%), Query Frame = -3 
Query:  186 KSFMPASTVDYGKKIGVTVTEKLSPVYEKVAGAGSTLMSKIPGTTNTGSEKEHGVGAQDKGVSVKDYFAEKLRPGEEDRALSQVITEALRKKKAKQENKSTSSRPVTEVVSDALHNRNEEPEEITSRPMGKVTESEEVARRLGTTEHDTSNEGIDSSFVNNSNMGVVGKIKGAVGSWFGGKG------EETPGSQQSHSAPVGSALDEAGRXXXXXTGERRLQETGN 848
            K   P S   YG+K+  TV EKL+PVYEKV   GST+M+K+P +      KE   G ++KGV+ K+Y +EKL+PGEED+ALS++I E L       E K+T+++ V   V           E+I          S+++A   G  E   + EG           G+VGK+KGAV SW GGK       EE+P S  +    +G + D  G       G + +Q++GN
Sbjct:  424 KDETPRSVTAYGQKVAGTVAEKLTPVYEKVKETGSTVMTKLPLSGGGSGVKETQQG-EEKGVTAKNYISEKLKPGEEDKALSEMIAEKLH-FGGGGEKKTTATKEVEVTV-----------EKI---------PSDQIAEGKGHGE-AVAEEG-------KGGEGMVGKVKGAVTSWLGGKPKSPRSVEESPQSLGTTVGTMGFS-DSGGSELGGSGGGKGVQDSGN 619
The following BLAST results are available for this feature:
BLAST of CN186044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LTI65_ARATH3.499e-2336.12Low-temperature-induced 65 kDa protein OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186044 ID=CN186044; Name=CN186044; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTAACTGAACCACAGGCACTATATTATTACGAACAGAATTACAGAA
CGGTCAATTCACATTTAAGAGTACACAAAATACTAACAATAACCTTCAAC
AAATCCAAGCATACAACACTTCAAAAAAAAGAAAAAAACTTTTATCGCAA
TAAAATCAAGGCCCCTGTCAGATGGACAGTCATCAGTTTCCAGTCTCCTG
AAGCCTGCGCTCCCCAGTAGTGTTGTTATTGTTGCGTCCTGCTTCATCAA
GAGCAGAACCAACGGGGGCACTATGTGATTGCTGAGACCCCGGAGTCTCC
TCTCCTTTTCCACCAAACCACGAACCTACAGCACCTTTGATCTTACCCAC
CACACCCATATTGGAATTATTCACAAAGCTCGAATCAATTCCCTCATTAG
AAGTATCATGCTCTGTGGTGCCCAATCTCCTTGCGACCTCCTCAGATTCA
GTCACCTTTCCCATTGGCCTACTTGTTATCTCCTCAGGTTCTTCATTCCG
ATTATGCAAAGCATCCGAGACTACTTCAGTCACTGGCCTGGACGACGTAG
ACTTGTTCTCCTGCTTTGCCTTCTTCTTTCGCAGAGCCTCAGTTATGACC
TGTGAGAGCGCCCGGTCTTCTTCTCCAGGCCTCAATTTCTCTGCAAAATA
GTCCTTCACAGAAACTCCTTTGTCTTGCGCCCCAACCCCGTGTTCCTTCT
CGCTGCCTGTATTAGTAGTGCCAGGTATTTTCGACATGAGAGTACTTCCA
GCCCCAGCAACCTTCTCATAAACTGGACTCAGTTTCTCTGTCACAGTAAC
GCCAATCTTCTTTCCGTAATCTACTGTTGATGCTGGCATAAAGCTCTTAC
TCTTGT
back to top