CN186042

Overview
NameCN186042
Unique NameCN186042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186042_ssr504 microsatellite CN186042_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.452e-31
Identity = 93/219 (42.47%), Postives = 112/219 (51.14%), Query Frame = -1
Query:  203 KSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF--------------XXXXXXXXXXXAKKRCMPS---PELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELSQQISSLESFLGLEPLMSQPSGNGAGGYDSVDFWMLDDVAATQQ 805
            K HP   + VK E  +    + A   GK +K    RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT           AK+IRGDKAKLNF                         AKK C+ S    EL+QP F          P   +GFG  +EF       + +++L QQISSLESFL L+   ++           VD WMLDDV A+ +
Sbjct:   47 KLHPTNQVNVKEEAVK---KEQATEPGKRRK----RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESVSEVDMWMLDDVIASYE 248          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 51/95 (53.68%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  521 KSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 805
            +S P Q   V + K     + +   +GK     R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T           A +IRG KAKLNF
Sbjct:   16 ESEPSQLGSVSSRKKRKPVSVSEERDGK-----RERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  521 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 718
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+           A+RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.102e-18
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  521 EGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 730
            E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T           A+RIRG KAK+NF
Sbjct:  114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.357e-18
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  521 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 721
            EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T           A+RIRG KAK+NF
Sbjct:  114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  521 EGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 730
            +GK+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT           AKRIRG KAKLNF
Sbjct:   16 DGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 59/141 (41.84%), Postives = 69/141 (48.94%), Query Frame = -1
Query:  308 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNFXXXXXXXXXXXAKKRCMPSPELTQPRFETIGTPPAPAP--SPWVGFGYQNEFYQPRAVDDEFELSQQISSLES 724
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T           A   RG KAKLNF              +  PSP  +  R   I TPP+P P  +P +       F Q R+ D    LS  + S  S
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPPPIAPDILLDQYGHF-QSRSSDSSANLSMNMLSSSS 190          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  521 EDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 760
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T           A R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = -1
Query:  521 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 700
            R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T           A R RG KAKLNF
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  521 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 703
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
The following BLAST results are available for this feature:
BLAST of CN186042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RAP23_ARATH1.452e-3142.47Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH2.405e-1853.68Ethylene-responsive transcription factor ERF071 OS... [more]
ERF1_ORYSJ3.140e-1866.67Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH4.102e-1864.29Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH5.357e-1864.18Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF73_ARATH3.472e-1762.86Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH1.319e-1641.84Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH1.319e-1655.00Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH9.456e-1563.33Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH2.106e-1460.66Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186042 ID=CN186042; Name=CN186042; organism=Citrus sinensis; type=EST; length=811bp
TTATTAGTATCGAGTCATTAACAACATAAAACACAAATTAAAATAAACAA
AGCTCTTTAACAACATAAACACAAAATCAAAACTACATAAACAGCATTAA
ACACTATAACTCAATACACAGACCCACACGAACACACAGCACGGCCACAA
CTCAATTCGTTTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTC
AGCTGCTGAGTCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTC
ATACCCACCAGCACCGTTTCCACTCGGCTGACTCATTAATGGCTCCAATC
CCAAAAACGATTCCAAGCTCGAAATTTGCTGGCTCAGCTCAAACTCGTCG
TCTACTGCCCTGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCA
CGGGGACGGCGCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCT
GAGTCAACTCAGGGGATGGCATGCAGCGTTTCTTAGCTGGGGGTGGAGCT
ATTGGCGGCGGCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGAT
ACGCTTGGCGGCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGA
AAGTGCCGAGCCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCT
GCCCATTTTCCCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCG
AACTCGCTGAGTCTTCTTCTCCTTCCCCTCAACACGAGCAGCTTTATTGC
TTGAATCTTCAGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGG
GATTTGCCATT
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