CN186040

Overview
NameCN186040
Unique NameCN186040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.862e-103
Identity = 178/222 (80.18%), Postives = 200/222 (90.09%), Query Frame = 1
Query:   40 FRDSEPMGQSLKIR----VKTGTRKGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            F  S+ M   LKIR    +     K F P KVVC+DYPRP++DNT N+LEAA+LSSSFR+SPRP+KPL++VIAGAGL GLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAPLNGILAIL+NNEMLTWPEKVKFAIGLLPA++GGQ+YVEAQDG++V++W
Sbjct:   44 FGGSDSMSHRLKIRNPHSITRRLAKDFRPLKVVCIDYPRPELDNTVNYLEAAFLSSSFRSSPRPTKPLEIVIAGAGLGGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEALPAPLNGILAILKNNEMLTWPEKVKFAIGLLPAMLGGQSYVEAQDGISVKDW 265          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 4.149e-103
Identity = 179/229 (78.17%), Postives = 201/229 (87.77%), Query Frame = 1
Query:   10 SESAFNLRYGFRDSEPMGQSLK-IRVKTGTRKGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            + S   + + F  S+ MG +L+   ++   R  F P +VVCVDYPRP+++NT NF+EAAYLSS+FR SPRP KPL +VIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYP +QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLP+PLNGI AILRNNEMLTWPEKVKFAIGLLPA++GGQ YVEAQDGL+VQEW
Sbjct:   25 ASSDATISFSFGGSDSMGLTLRPAPIRAPKRNHFSPLRVVCVDYPRPELENTVNFVEAAYLSSTFRASPRPLKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPYVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEW 253          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 7.076e-103
Identity = 178/222 (80.18%), Postives = 198/222 (89.19%), Query Frame = 1
Query:   40 FRDSEPMGQSLKIRVKTGTR----KGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            F  SE MG  LKIR    T     K   P KVVC+DYPRP++DNT N+LEAA+LSS+FR SPRP+KPL++VIAGAGL GLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMP+KPGEFSRFDF E LPAPLNGILAIL+NNEMLTWPEKVKFAIGLLPA++GGQ+YVEAQDG++V++W
Sbjct:   45 FAGSESMGHKLKIRTPHATTRRLVKDLGPLKVVCIDYPRPELDNTVNYLEAAFLSSTFRASPRPTKPLEIVIAGAGLGGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFSEALPAPLNGILAILKNNEMLTWPEKVKFAIGLLPAMLGGQSYVEAQDGISVKDW 266          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.824e-102
Identity = 176/213 (82.63%), Postives = 197/213 (92.49%), Query Frame = 1
Query:   55 PMGQSLKIRVKTGTRKGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            P  Q+LK R +  +  G  P +VVCVD PRP+++NT NFLEAA LS+SFR++PRP+KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK+AAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMP+KPGEFSRFDFP+VLPAPLNGI AILRNNEMLTWPEK+KFAIGLLPA++GGQAYVEAQDGL+V+EW
Sbjct:   37 PTSQALKTRTRRRSTAG--PLQVVCVDIPRPELENTVNFLEAASLSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMVGGQAYVEAQDGLSVKEW 247          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 6.854e-98
Identity = 174/223 (78.03%), Postives = 195/223 (87.44%), Query Frame = 1
Query:   37 GFRDSEPMGQSLKIRVK--TGTRKG--FCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            GFR SE +G  L++ V   +G R+       +VVC D PRP+++   NFLEAA LS+SFR+SPRP K L+VV+ GAGLAGLSTAKYLADAGHKP+LLE+RDVLGGK+AAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGI AILRNNEMLTWPEKV+FAIGLLPA++GGQAYVEAQDGLTV EW
Sbjct:   30 GFRSSECLGIQLQVPVPFYSGIRQSPRATSLQVVCKDCPRPELEGAVNFLEAAQLSASFRSSPRPEKGLEVVVVGAGLAGLSTAKYLADAGHKPILLESRDVLGGKIAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKVRFAIGLLPAMVGGQAYVEAQDGLTVTEW 252          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.293e-96
Identity = 166/192 (86.46%), Postives = 179/192 (93.23%), Query Frame = 1
Query:  118 KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            +VVC D+PRP ++NT NFLEA  LSS FR S +P+KPL+VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGK+AAWKD DG+WYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAPLNGI AILRNNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDG TV EW
Sbjct:   68 QVVCQDFPRPPLENTINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEW 259          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.293e-96
Identity = 166/192 (86.46%), Postives = 179/192 (93.23%), Query Frame = 1
Query:  118 KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            +VVC D+PRP ++NT NFLEA  LSS FR S +P+KPL+VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGK+AAWKD DG+WYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAPLNGI AILRNNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDG TV EW
Sbjct:   68 QVVCQDFPRPPLENTINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEW 259          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.263e-95
Identity = 164/192 (85.42%), Postives = 177/192 (92.19%), Query Frame = 1
Query:  118 KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            +VVC D+PRP +++T N+LEA  LSS FR S RPSKPL+VV+AGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPNIQNLFGEL I DRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAP+NGI AILRNNEMLTWPEKVKFAIGLLPA++GGQ YVEAQDGLTV EW
Sbjct:   60 QVVCKDFPRPPLESTINYLEAGQLSSFFRNSERPSKPLQVVVAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELRIEDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPINGIWAILRNNEMLTWPEKVKFAIGLLPAMVGGQPYVEAQDGLTVSEW 251          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.104e-63
Identity = 112/155 (72.26%), Postives = 132/155 (85.16%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            ++VVIAGAGLAGL+ AKYLADAG  P++LE RDVLGGK+AAWKD DG+WYETGLHIFFGAYPN+  LF EL I DRLQWKEHSMIF  P KPG +SRFDFP++ PAP+NG++AILRNN+MLTWPEK++F +GLLPAI+ GQ+YVE  D  T  EW
Sbjct:    1 MRVVIAGAGLAGLACAKYLADAGFTPVVLERRDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWKEHSMIFNQPEKPGTYSRFDFPDI-PAPINGLVAILRNNDMLTWPEKIRFGLGLLPAIVQGQSYVEEMDKYTWSEW 154          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.350e-61
Identity = 110/155 (70.97%), Postives = 127/155 (81.94%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693
            ++V IAGAGLAGLS AKYLADAGH P++ E RDVLGGKVAAWKD DG+WYETGLHIFFGAYPN+  LF EL I DRLQWK HSMIF  P KPG +SRFDFP++ PAP+NG+ AIL NN+MLTW EK+KF +GLLPA+I GQ+YVE  D  +  EW
Sbjct:    1 MRVAIAGAGLAGLSCAKYLADAGHTPIVYERRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELNIEDRLQWKSHSMIFNQPTKPGTYSRFDFPDI-PAPINGVAAILSNNDMLTWEEKIKFGLGLLPAMIRGQSYVEEMDQYSWTEW 154          
The following BLAST results are available for this feature:
BLAST of CN186040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_CAPAN1.862e-10380.18Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN4.149e-10378.17Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOLLC7.076e-10380.18Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH7.824e-10282.63Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_NARPS6.854e-9878.03Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ1.293e-9686.46Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI1.293e-9686.46Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE9.263e-9585.42Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNY31.104e-6372.26Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]
CRTI_SYNE71.350e-6170.97Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186040 ID=CN186040; Name=CN186040; organism=Citrus sinensis; type=EST; length=695bp
AGGAGCGTTTCTGAAAGTGCTTTCAACTTGCGATATGGTTTCCGAGATAG
TGAACCGATGGGTCAGAGCCTGAAAATTCGAGTTAAAACGGGGACAAGGA
AGGGTTTCTGTCCTTCGAAGGTGGTTTGTGTGGACTACCCAAGACCAGAT
ATTGATAATACATCTAATTTCTTGGAAGCTGCTTACTTGTCTTCGTCATT
TCGTACTTCTCCTCGTCCTTCTAAGCCGTTGAAAGTTGTAATTGCTGGTG
CAGGTTTGGCTGGTTTATCAACTGCAAAATATTTGGCAGATGCAGGCCAC
AAGCCTTTGTTACTGGAAGCAAGAGATGTTCTAGGTGGAAAGGTAGCTGC
CTGGAAAGATGGGGACGGGAACTGGTATGAGACAGGCCTTCATATTTTCT
TCGGGGCTTACCCAAATATACAGAACCTGTTTGGAGAACTTGGTATTAAT
GATCGGTTGCAGTGGAAGGAGCACTCTATGATTTTTGCAATGCCAAACAA
GCCCGGAGAATTCAGCCGATTTGATTTTCCTGAAGTTCTTCCGGCTCCGC
TAAATGGGATATTGGCCATTTTAAGGAATAATGAAATGCTGACTTGGCCG
GAGAAAGTGAAGTTTGCAATTGGACTGCTTCCAGCAATAATTGGCGGACA
GGCATATGTTGAAGCTCAAGATGGTTTAACTGTTCAGGAGTGGAT
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