CN186034

Overview
NameCN186034
Unique NameCN186034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig864 contig Csv1_Contig864:443..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186034 vs. ExPASy Swiss-Prot
Match: NUD20_ARATH (Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.639e-94
Identity = 144/186 (77.42%), Postives = 165/186 (88.71%), Query Frame = 2
Query:  194 QLYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTEFFKPNCSLVIIDFLFRHGYICPGYFGYL 751
            +LYPV  +F +P+FFSLERAAAPYFGIK YGVHMNGYVE+DGQK LWIGKRS  K TYPGMLDHLVAGGLPHGI+CG N++KECEEEAGI R+I++RA  VGAVSY+DI+ + +KRDVLFCYDL+LPEDFVPKNQDGEVESF+LIPVA VA+VI++T FFK NCSLVIIDFLFRHG+I P   GYL
Sbjct:  177 ELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDIDQYCFKRDVLFCYDLELPEDFVPKNQDGEVESFKLIPVAQVASVIKKTSFFKANCSLVIIDFLFRHGFIRPESSGYL 362          

HSP 2 Score: 61.2326 bits (147), Expect = 1.639e-94
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 RVVGYTHNRFASHLRKYDDVFIYSENNG--GRFGSHLKLNSKLKTADERTRVVGEVIKCLGEEDLIPAL 201
            ++VGY H RF  +LR++ D+F +S+N     R   ++ LN  L+  ++RTR V +VIK LG++ +IP +
Sbjct:  106 QIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGI 174          
BLAST of CN186034 vs. ExPASy Swiss-Prot
Match: NUD24_ARATH (Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.234e-87
Identity = 132/186 (70.97%), Postives = 157/186 (84.41%), Query Frame = 2
Query:  194 QLYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTEFFKPNCSLVIIDFLFRHGYICPGYFGYL 751
            +LYPV  +F +P FFS+ERAAAPYFG+K Y +H+NGYVE+DGQKFLWIGKRS  K TYPG LDHLVAGGLPHGI+  EN++KECEEEAGI + +++RA  VG VSYMDI+ + + RDVLFCYDL+LP+DFVP NQDGEV+SF+LIPVA VANV+R+T FFK +CSLVIIDFLFRHG I P   GYL
Sbjct:  168 ELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKFLWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVSYMDIDRYCFTRDVLFCYDLELPQDFVPTNQDGEVDSFRLIPVAQVANVVRKTSFFKDSCSLVIIDFLFRHGLIRPESPGYL 353          

HSP 2 Score: 59.3066 bits (142), Expect = 5.234e-87
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 RVVGYTHNRFASHLRKYDDVFIYSENNGGRFGSHLKLNSKLKTADERTRVVGEVIKCLGEEDLIPAL 201
            ++VGY H  F  +LR ++D+F +S+     +G H+ LN  L   +ERTR V  VIK LG + +IP +
Sbjct:  104 QIVGYIHKGFTKYLRDFNDIFTFSQ-----YGGHVTLNMMLDKPEERTRAVAHVIKILGNKGIIPGI 165          
BLAST of CN186034 vs. ExPASy Swiss-Prot
Match: YJ9J_YEAST (Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae GN=YJR142W PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.367e-33
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 2
Query:  242 LERAAAPYFGIKAYGVHMNGYV--EKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRS-ISNRARPVGAVSYMDING------FSYKRD-----VLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTEFFKPNCSLVIIDFLFRHGYICP 733
            +ERA A   GI  YG+H+NGYV   K  +   W+ +RS+ K T+P MLD+++AGGL +     E ++KE  EEA + +S I +  +  G+VSY+   G      F+ + D     V + YDLKL ED +PK  DGEVESF L  +    N +R+ E FKPNC+LV++DFL RHGYI P
Sbjct:  143 VERAVAGVLGIITYGIHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGLGYPYGIYETVLKESMEEANLEKSVIEDNIKATGSVSYLYFTGDISVTKFNKESDFIVGEVQYVYDLKLSEDIIPKPNDGEVESFNLFSLQETINALRKKE-FKPNCALVMVDFLIRHGYITP 319          
BLAST of CN186034 vs. ExPASy Swiss-Prot
Match: TNR3_SCHPO (Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe GN=tnr3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 68/189 (35.98%), Postives = 105/189 (55.56%), Query Frame = 2
Query:  194 QLYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVE--KDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSY-KRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTEFFKPNCSLVIIDFLFRHGYICPGYFGYL 751
            +LY V      P+  ++ER     FG  + GVH   Y+   K+    +W+ +RS  K T+P  LD+ VAGG+ HG +    +IKE  EEA +  S  N   P G VSY+ +    + + ++ + +DL + +  +P+  DGEV  F L+P+  V + +   + FKPNC+LV++DFL RHG I P +  YL
Sbjct:  107 ELYTVYGKSKKPVL-AVERGGFWLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAGGIAHGDSVIGTMIKEFSEEANLDVSSMNLI-PCGTVSYIKMEKRHWIQPELQYVFDLPVDDLVIPRINDGEVAGFSLLPLNQVLHEL-ELKSFKPNCALVLLDFLIRHGIITPQHPQYL 292          
The following BLAST results are available for this feature:
BLAST of CN186034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NUD20_ARATH1.639e-9477.42Nudix hydrolase 20, chloroplastic OS=Arabidopsis t... [more]
NUD24_ARATH5.234e-8770.97Nudix hydrolase 24, chloroplastic OS=Arabidopsis t... [more]
YJ9J_YEAST1.367e-3344.38Uncharacterized protein YJR142W OS=Saccharomyces c... [more]
TNR3_SCHPO4.408e-2435.98Thiamine pyrophosphokinase OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186034 ID=CN186034; Name=CN186034; organism=Citrus sinensis; type=EST; length=753bp
AGGGTTGTTGGTTACACACATAATCGTTTCGCTAGCCACCTGAGGAAATA
CGACGACGTATTCATATACTCTGAAAACAACGGAGGTCGATTTGGCAGTC
ACCTGAAGTTAAATTCAAAGCTGAAAACAGCCGATGAGAGGACGAGAGTT
GTCGGAGAAGTGATTAAATGCTTGGGCGAAGAAGATTTGATTCCAGCTCT
ATCCTGTAACATCAACCTTTGGTTCTCCGATCTTTTTCTCGCTGGAACGC
GCCGCTGCTCCTTACTTTGGAATAAAGGCTTATGGAGTTCACATGAATGG
TTATGTTGAAAAAGACGGGCAAAAATTTCTATGGATTGGAAAACGAAGTC
AAGTCAAACCTACTTATCCAGGAATGCTTGATCATCTAGTTGCTGGAGGA
TTGCCCCATGGTATTGCTTGTGGGGAGAATATAATCAAGGAATGTGAAGA
GGAAGCGGGAATACCTAGATCCATATCCAATAGAGCTAGACCAGTGGGAG
CTGTTTCCTATATGGACATTAATGGGTTTAGTTACAAAAGAGACGTTCTG
TTTTGCTACGATTTGAAGCTACCTGAAGATTTTGTTCCTAAGAATCAAGA
CGGAGAGGTAGAAAGCTTCCAGTTGATCCCTGTGGCACATGTTGCAAATG
TCATAAGGAGGACAGAGTTCTTCAAGCCAAATTGCTCCCTAGTCATCATT
GATTTCTTGTTTCGACATGGGTACATTTGTCCCGGATATTTTGGATACTT
GGA
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