CN186033

Overview
NameCN186033
Unique NameCN186033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186033 vs. ExPASy Swiss-Prot
Match: NUD20_ARATH (Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.070e-71
Identity = 129/167 (77.25%), Postives = 145/167 (86.83%), Query Frame = -3
Query:   94 VPLNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGGNIIKECEEEAGIPRSISNRASPVGAVSYMDIKGFSSKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRGTEFFKPNCSLVIIDFLFRHGYICPEYFGYLDLLQSLRSGDCS 594
            V +NGYVE+DGQK LWIGKRS  K TYPGMLDHLVAGGLPHGI+CGGN++KECEEEAGI R+I++RA  VGAVSY+DI  +  KRDVLFCYDL+LPEDFVPKNQDGEVESF+LIPVA VA+VI+ T FFK NCSLVIIDFLFRHG+I PE  GYLDL Q LR+ DCS
Sbjct:  208 VHMNGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDIDQYCFKRDVLFCYDLELPEDFVPKNQDGEVESFKLIPVAQVASVIKKTSFFKANCSLVIIDFLFRHGFIRPESSGYLDLYQRLRNRDCS 374          
BLAST of CN186033 vs. ExPASy Swiss-Prot
Match: NUD24_ARATH (Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.954e-65
Identity = 119/167 (71.26%), Postives = 138/167 (82.63%), Query Frame = -3
Query:   94 VPLNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGGNIIKECEEEAGIPRSISNRASPVGAVSYMDIKGFSSKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRGTEFFKPNCSLVIIDFLFRHGYICPEYFGYLDLLQSLRSGDCS 594
            + +NGYVE+DGQKFLWIGKRS  K TYPG LDHLVAGGLPHGI+   N++KECEEEAGI + +++RA  VG VSYMDI  +   RDVLFCYDL+LP+DFVP NQDGEV+SF+LIPVA VANV+R T FFK +CSLVIIDFLFRHG I PE  GYLDL + LR+GDCS
Sbjct:  199 IHVNGYVERDGQKFLWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVSYMDIDRYCFTRDVLFCYDLELPQDFVPTNQDGEVDSFRLIPVAQVANVVRKTSFFKDSCSLVIIDFLFRHGLIRPESPGYLDLYRRLRNGDCS 365          
BLAST of CN186033 vs. ExPASy Swiss-Prot
Match: YJ9J_YEAST (Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae GN=YJR142W PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.260e-28
Identity = 73/173 (42.20%), Postives = 102/173 (58.96%), Query Frame = -3
Query:  121 VPLNGYV--EKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGGNIIKECEEEAGIPRS-ISNRASPVGAVSYMDIKG------FSSKRD-----VLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRGTEFFKPNCSLVIIDFLFRHGYICPEYF-GYLDLL 594
            + +NGYV   K  +   W+ +RS+ K T+P MLD+++AGGL +       ++KE  EEA + +S I +     G+VSY+   G      F+ + D     V + YDLKL ED +PK  DGEVESF L  +    N +R  E FKPNC+LV++DFL RHGYI PE    YL+L+
Sbjct:  158 IHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGLGYPYGIYETVLKESMEEANLEKSVIEDNIKATGSVSYLYFTGDISVTKFNKESDFIVGEVQYVYDLKLSEDIIPKPNDGEVESFNLFSLQETINALRKKE-FKPNCALVMVDFLIRHGYITPENEPNYLELV 329          
BLAST of CN186033 vs. ExPASy Swiss-Prot
Match: TNR3_SCHPO (Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe GN=tnr3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.384e-23
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = -3
Query:  112 LWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGGNIIKECEEEAGIPRSISNRASPVGAVSYMDI-KGFSSKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRGTEFFKPNCSLVIIDFLFRHGYICPEYFGYLDLLQSL 552
            +W+ +RS  K T+P  LD+ VAGG+ HG +  G +IKE  EEA +  S  N   P G VSY+ + K    + ++ + +DL + +  +P+  DGEV  F L+P+  V + +   + FKPNC+LV++DFL RHG I P++  YL  L+ +
Sbjct:  153 IWVPRRSPTKQTWPNYLDNSVAGGIAHGDSVIGTMIKEFSEEANLDVSSMN-LIPCGTVSYIKMEKRHWIQPELQYVFDLPVDDLVIPRINDGEVAGFSLLPLNQVLHELE-LKSFKPNCALVLLDFLIRHGIITPQHPQYLQTLERI 298          
The following BLAST results are available for this feature:
BLAST of CN186033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NUD20_ARATH1.070e-7177.25Nudix hydrolase 20, chloroplastic OS=Arabidopsis t... [more]
NUD24_ARATH1.954e-6571.26Nudix hydrolase 24, chloroplastic OS=Arabidopsis t... [more]
YJ9J_YEAST7.260e-2842.20Uncharacterized protein YJR142W OS=Saccharomyces c... [more]
TNR3_SCHPO5.384e-2339.19Thiamine pyrophosphokinase OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186033 ID=CN186033; Name=CN186033; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTTTTTTTTTTCTTTATAAACAATCCAATTTATTTGGGGGATTA
AAAAAAAACCTTTAAAGAAGATAGGCCCGGAAACAAATAATTAGGAGCAA
TCCCCGCTTCTCAAACTCTGTAGTAAATCCAAGTATCCAAAATATTCCGG
ACAAATGTACCCATGTCGAAACAAGAAATCAATGATGACTAGGGAGCAAT
TTGGCTTGAAAAACTCTGTCCCCCTTATGACATTTGCAACATGGGCCACA
GGGATCAACTGGAAGCTTTCTACCTCTCCGTCTTGATTCTTAGGAACAAA
ATCTTCAGGGAGCTTCAAATCGTAGCAAAACAGAACGTCTCTTTTGGAAC
TAAACCCTTTAATGTCCATATAGGAAACAGCTCCCACGGGGCTAGCTCTA
TTGGATATGGATCTAGGTATTCCCGCTTCCTCTTCACATTCCTTGATTAT
ATTCCCCCCACAAGCAATACCATGGGGCAATCCTCCAGCAACTAGATGAT
CAAGCATTCCTGGATAAGTAGGTTTGACTTGACTTCGTTTTCCAATCCAT
AAAAATTTTTGCCCGTCTTTTTCAACATAACCATTCAGGGGAACTC
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