CN186031

Overview
NameCN186031
Unique NameCN186031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186031_ssr450 microsatellite CN186031_ssr450:450..461. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig856 contig Csv1_Contig856:74..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186031 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.168e-22
Identity = 52/87 (59.77%), Postives = 73/87 (83.91%), Query Frame = -3 
Query:  480 LRDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGAD-NAANVSLEVLKQLPPLQERE 737
            + ++VT+ LEAGKPIY+PSF +G+LRR LP++KVE+++G++LTAD  GAVFDV  +DLDLF +GA  +A ++SLEV+K +P LQERE
Sbjct:  543 MENYVTLHLEAGKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADKTGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQERE 629
[Close]
BLAST of CN186031 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.687e-21
Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = -3 
Query:  477 LRDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 737
            +  +VT++L+AG+P Y  SFA+ VL+RFLP  K + + G+ALTAD +GAVFDVPV DL+ F  GA+NAA V+L+V+K LPPL+E+ Q
Sbjct:  554 MEGYVTLLLDAGRPFYGQSFAYTVLKRFLPATKADSIMGVALTADKSGAVFDVPVDDLETFLVGAENAAGVNLDVVKALPPLEEKVQ 640
[Close]
BLAST of CN186031 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = -3 
Query:  477 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 731
            +H T++L+ G+ +Y   F    L+RF+PEE++  VKG+ +TADG GAVFDVP A+++ +  GA NAA V++E +KQLPPLQEREQ
Sbjct:  565 NHTTLLLQTGRSVYAAGFVLSTLKRFMPEERLADVKGITITADGTGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQEREQ 649
The following BLAST results are available for this feature:
BLAST of CN186031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH7_ARATH1.168e-2259.77DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH7_SPIOL1.687e-2156.32DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
RH7_ORYSJ2.436e-2052.94DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186031 ID=CN186031; Name=CN186031; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTGCACTAATTTTTTCTGCTTAAATTAGAAGACATT
AGTAATCGTCTTCTTACAATATCATCAAAATTTAAGGATCATGGGGAGTA
GTTATAAACCCCGAGAACCTGAACAAATATTGGCCTAACCCTAAAAATAA
ATGGAGGAAAAAAAGGGGGGCAAAAATACTATATCGAGCCAATCTAGGGA
TGAAATCCATGGATACAGCCCCATATATTTTCTTCATTATCAGAAAATTA
ATTTGCCTATACCATAAATACTTCTGTCACTGAACAGAATAAGATTCGTG
GCAGCTGAAGTCCTTCACCATCTGTTGCCACCACCACGACCCTTACTACC
TCTAAACCCACCGGAGAACCTATCATTTCTCCTATCAGAAAATCCACCAC
CTCTGCCACCTGAAAACCTGTTACCACCTCTTCCACCAAAGCCACTACGA
CCACCACCACCAAATCTTCCTCTTGACTGTTCCCTTTCTTGCAAGGGTGG
CAATTGTTTCAACACTTCCAAGCTGACGTTAGCAGCATTGTCCGCACCAG
ATCGAAACAAATCCAAATCTGCCACTGGTACATCAAAAACCGCACCATTT
CCATCAGCGGTCAGAGCCATACCCTTCACTAACTCTACTTTTTCCTCAGG
CAAGAATCTTCTCAAGACACCAAAAGCAAAGGATGGTGTGTAGATGGGCT
TTCCTGCTTCAAGAACCACTGTAACATGATCCCTGAGATGACATATGTAA
ATCTCCAACTGAATCCTGAACGTTATACTGGCTACACTGG
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