CN186028

Overview
NameCN186028
Unique NameCN186028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:103..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.437e-110
Identity = 187/203 (92.12%), Postives = 196/203 (96.55%), Query Frame = -2
Query:  163 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 771
            PKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 8.718e-108
Identity = 188/202 (93.07%), Postives = 194/202 (96.04%), Query Frame = -2
Query:  166 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 771
            PKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:   18 PKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 3.313e-107
Identity = 186/201 (92.54%), Postives = 194/201 (96.52%), Query Frame = -2
Query:  169 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 771
            PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:   18 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 374.4 bits (960), Expect = 3.791e-103
Identity = 178/201 (88.56%), Postives = 187/201 (93.03%), Query Frame = -2
Query:  169 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 771
            PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 8.444e-103
Identity = 177/201 (88.06%), Postives = 187/201 (93.03%), Query Frame = -2
Query:  169 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 771
            PKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 4.634e-101
Identity = 172/200 (86.00%), Postives = 190/200 (95.00%), Query Frame = -2
Query:  172 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 771
            PKSR+CRGVPDPKIRI+DVG KK+ VDEFPFCVHLVSWEKENVSSEALEA RIACNKYM K+AGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:   18 PKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.032e-100
Identity = 176/201 (87.56%), Postives = 187/201 (93.03%), Query Frame = -2
Query:  169 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 771
            PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.923e-100
Identity = 175/203 (86.21%), Postives = 187/203 (92.12%), Query Frame = -2
Query:  163 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 771
            PKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 8.739e-100
Identity = 176/201 (87.56%), Postives = 185/201 (92.04%), Query Frame = -2
Query:  169 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 771
            PKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 363.229 bits (931), Expect = 8.739e-100
Identity = 176/201 (87.56%), Postives = 185/201 (92.04%), Query Frame = -2
Query:  169 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 771
            PKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:   18 PKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
The following BLAST results are available for this feature:
BLAST of CN186028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_VITRI1.437e-11092.1260S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME8.718e-10893.0760S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_EUPES3.313e-10792.5460S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH3.791e-10388.5660S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH8.444e-10388.0660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_PINTA4.634e-10186.0060S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_MAIZE1.032e-10087.5660S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL103_ARATH3.923e-10086.2160S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL102_ORYSJ8.739e-10087.5660S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI8.739e-10087.5660S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186028 ID=CN186028; Name=CN186028; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTCACTTAACAACTGCAAGGATCACATAGTTAAACCAAAGAA
ACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAA
ATGGAAAATAATAAACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACA
GTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTT
GAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGG
ACAATCCTGTTCTCCGACTTCCACCGCAGATAATCAGCACGGCTGAACTT
GGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACT
TGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCC
TTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGT
TCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAG
CCCCAGCACACGAAAGCATCTTGTTAATACGCAGAACATGGAAGGGGTGC
ACCCTCACTCGCAAATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTA
CTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCT
CCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCT
TTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACC
GCGGCAAAAGCGGGACTTTGGG
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