CN186023

Overview
NameCN186023
Unique NameCN186023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.422e-60
Identity = 116/181 (64.09%), Postives = 143/181 (79.01%), Query Frame = -2
Query:  256 RREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 789
            RRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++ITN+PIL+KG+LT EDA  A++ G AGIIVSNHGARQLDY PATISALEEVV A +GRVP+ +DGGVRRGTDVFKALALGA  + IGRPVV+ LAA+GE GV++V++ML+DEFELTMAL+GC
Sbjct:  163 RRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGC 343          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.167e-60
Identity = 116/181 (64.09%), Postives = 142/181 (78.45%), Query Frame = -2
Query:  256 RREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 789
            RRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++IT LPIL+KG+LT EDA  A++ G AGIIVSNHGARQLDY PATISALEEVV A +GR+P+ +DGGVRRGTDVFKALALGA  + IGRPVV+ LAA+GE GVR+V++ML+DEFELTMAL+GC
Sbjct:  163 RRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGC 343          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.203e-59
Identity = 115/181 (63.54%), Postives = 142/181 (78.45%), Query Frame = -2
Query:  256 RREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 789
            RREADIKN+ + PP   LKN EG+   K+     S   +     +D SLSWKD+ WL++IT+LPIL+KG++T EDA  AV+ G AGIIVSNHGARQLDY PATI ALEEVV A +GR+P+ +DGGVRRGTDVFKALALGA  V IGRPVV+ LAA+GE GV++V++M++DEFELTMAL+GC
Sbjct:  163 RREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGC 343          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.074e-47
Identity = 93/180 (51.67%), Postives = 132/180 (73.33%), Query Frame = -2
Query:  256 DIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 777
            D++N+   PP   ++   ++ +S     NF  D+       + +D S+SW+D++WLR +T+LPI+ KGIL  +DA +AV+ G+ GI+VSNHGARQLD  PATI  L E+V AV+G+V + +DGGVR+GTDV KALALGA+AV +GRP+V+GLA +GE GV+ V+E+LK+EF L MAL+GC
Sbjct:  170 DVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGC 349          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.945e-47
Identity = 92/180 (51.11%), Postives = 130/180 (72.22%), Query Frame = -2
Query:  256 DIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 777
            D++N+   PP   ++   +  ++     NF  ++       + +D SLSW D+ WLR +T+LPI++KGIL  +DA +AV+ GV GI+VSNHGARQLD  PATI  L E+V AV+G+V + +DGGVR+GTDV KALALGA+AV +GRP+++GLA +GE GV+ V+E+LK+EF L MAL+GC
Sbjct:  170 DVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGC 349          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.693e-43
Identity = 93/177 (52.54%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  256 READIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 786
            R  DI N++    +K L  LL    S + G+         +D S+ W+DL W +S+T LPI++KGILT+EDA  AV+  V GIIVSNHG RQLD  PA+I AL EVV AVKG+V + +DGG+R G DV KALALGA+ V +GRP+++GLA KGE+GV+ V+++LK+EF  +M LTGC
Sbjct:  165 RRNDITNQVDL--MKKL--LLKDLGSPEMGNVMPYFQMSPIDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGC 337          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.478e-41
Identity = 82/137 (59.85%), Postives = 105/137 (76.64%), Query Frame = -2
Query:  256 MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 666
            +  SL W DL W +SIT LPI++KGILT+EDA  AV+  V GIIVSNHG RQLD   A+I AL EVV AVKG++ + +DGGVR G DV KALALGA+ + +GRP+++GLA KGE+GV+ V+ +L +EF  +MALTGC
Sbjct:  199 ISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGC 335          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.521e-41
Identity = 91/184 (49.46%), Postives = 120/184 (65.22%), Query Frame = -2
Query:  259 RREADIKNKMITP---PLKNLEGLLSTKVSSDTGSNFEADANE----TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 789
            +R AD KN    P    LK  E L+         SN +   N+     +D SL+W DL+WL+SIT LPIL+KGI+  +DA  A++ G  GIIVSNHG RQLD  P+TI  L  +   V+GRVP+++DGG+RRGTDV KALA GA AV IGRP+++GL+  G+ GV +V+ +L  E +L MALTG
Sbjct:  192 KRTADFKNSFKLPNGLSLKIFEKLML--------SNLDGGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHGGRQLDTCPSTIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTG 367          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 89/176 (50.57%), Postives = 119/176 (67.61%), Query Frame = -2
Query:  256 EADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 783
            EA+IK K +  P ++  GL  T +S  + S+              W DL  L+S+T LPI++KGILT+EDA  AV+  + GIIVSNHG RQLD  PA+I AL EVV AV G++ + MDGGVR G DV KALALGA+ + +GRP+++GLA KGE GV+ V+++LK+E    MAL+GC
Sbjct:  176 EANIKLKDLRSPGESKSGL-PTPLSMPSSSS-------------CWNDLPLLQSMTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGC 337          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 8.966e-39
Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = -2
Query:  256 LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGC 747
            LK+L  L   K +     +F         AS  W DL  L+SIT LPI++KGILT+EDA  A++  V GI+VSNHG RQLD   A+I AL EVV AVKG++ + MDGGVR GTDV KALALGA+ + +GRP+++GLA KGE GV+ V+++L  E    M L+GC
Sbjct:  181 LKDLRALKEEKPTQSVPVSFPK-------ASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGC 337          
The following BLAST results are available for this feature:
BLAST of CN186023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX1_ARATH1.422e-6064.09Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX2_ARATH3.167e-6064.09Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX_SPIOL1.203e-5963.54Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN3.074e-4751.67Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE8.945e-4751.11Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN2.693e-4352.54Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN1.478e-4159.85Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX_DICDI2.521e-4149.46Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_MOUSE4.754e-4050.57Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
HAOX2_RAT8.966e-3951.83Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186023 ID=CN186023; Name=CN186023; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTACCAAATGGTTGTATAATATCCCTTTTAGATTC
AATACCTAATACACATACAAANATAATACAAATACCACTTGTTATTAAAN
ATAATACACATACAACACTAATATATATAGAGTGGTGTCAAAACGCACCC
CTTAAACATTTCTTGCAACACCAATAATATTTACACGCATCGAATGGGAT
TCTCTCCTCGCTCAGGTTCTCACATGTCTTCCTGGTAATATGTTTCACAC
CTAGGACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCAT
TTCGATGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGA
CTACAGGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTG
AAAACATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCT
TCCTTTAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGAC
TATAATCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACA
CCTACTTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGAT
CAAAATTGGTAAGTTTGTAATAGATCTTAGCCATTCTAAATCCTTCCAAC
TTAAAGAAGCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCT
GTATCAGAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGG
CGGTGTAATCATTTTGTTCTTTATATCTGCCTCCCTTCTA
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