DC900130

Overview
NameDC900130
Unique NameDC900130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:270..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900130 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 3
Query:   12 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 374
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110          
The following BLAST results are available for this feature:
BLAST of DC900130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.154e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionDC900130 VSS Citrus sinensis cDNA clone VS27V47 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900130 ID=DC900130|Name=DC900130|organism=Citrus sinensis|type=EST|length=697bp
TAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCT
CAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTT
AGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGA
GGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACG
CCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTT
TCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTG
ACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGT
GGGGAGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCG
ATGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAG
TCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGT
TTTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTT
TAAAATGCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATC
ATATAATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGG
AGATGAAAGGNTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGT
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