CN186011

Overview
NameCN186011
Unique NameCN186011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186011_ssr681 microsatellite CN186011_ssr681:681..692. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186011 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = -1
Query:  428 QCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCAGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAK 661
            +C ++S C  G TCCCI  F   C+ +GCCP E A CC     CCP DYPIC++ +G C    G+ LGV A  R+LA+
Sbjct:  255 ECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQ 332          
BLAST of CN186011 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 37/77 (48.05%), Postives = 43/77 (55.84%), Query Frame = -1
Query:  428 CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCAGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAK 658
            C D   CP+G TCCC FGF + C ++GCCP E A CC     CCP DYP+C+   G C       L V A  R LAK
Sbjct:  386 CDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN186011 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = -1
Query:  419 CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCAGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKL 658
            C ++  CP   TCCCI+ +  +C+ +GCCP E A CC     CCP +YPIC++++G CL      L V A  R LAK  L
Sbjct:  367 CDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKPNL 446          
BLAST of CN186011 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = -1
Query:  440 QCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCAGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSR 661
            QC  +  CP   TCCC+F +  +C+ +GCCP E A CC     CCP +YP+CD+++G CL        V A  R
Sbjct:  374 QCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKR 447          
BLAST of CN186011 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = -1
Query:  479 QCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCAGTQDCCPADYPICDIEEGLCLK 661
            QC  +S CP+G TCCC +G  + C ++GCCP E A CC     CCP +YP+C+ +   C K
Sbjct:  394 QCDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSK 454          
The following BLAST results are available for this feature:
BLAST of CN186011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYSPL_SOLLC1.082e-1847.44Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ1.846e-1848.05Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
ORYA_ORYSJ1.197e-1743.75Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.323e-1641.89Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP1_ORYSJ7.259e-1545.90Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186011 ID=CN186011; Name=CN186011; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCCTTCAAGAAGGTTCCAGCTATTCCATTAAGGG
TATCCAAATTATTATATATAAAAAAACTGCACCTTAATTATACAAAGCAA
ACCGCAGAATAAGTCATTTATTGTGATAAAACCCCATATGACAACGAGGC
CTGGATTATGATGCTAAAGTGGCTTCAATTTGAACAACCTTTCAAGCCAT
GAGATATGGACAAAAATTTTAAGGGCTGTTTCCCAGAAACTATTTAGAAG
AAAAAAGCGACATAGCAAGAGTGAAGGCAACCTTCAAAGTTCAAAGTTCA
CACTCAACGAGACGATAAATGAATGTTGCTCATTTATTTAGCGTATTGCA
GCAAATGGGTTCCTCTTCCACTGAAGAGATTGGTGCATCTTCTCTGTTTC
CTCAATTTTAGGCCATGGCAACTTATGCTTAGCCAGCATTCGGCTCTTTG
CCGCTACTCCCAGGTAATCTCCGTACTTCTTGAGGCAGAGCCCTTCTTCA
ATATCACAAATAGGATAATCAGCAGGGCAGCAGTCTTGAGTTCCAGCGCA
GCAAACAGCATTCTCATAGGGACAGCAGCCATAGATCCAGCAAAAATCCA
AGAACCCAAAAATGCAACAACAGGTTTCACCACTTGGACAATAGGAAAAG
TCTCCGCATTGACTTGGTGATGGAGATGGAGGTGGTGGTGGTGG
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