CN186010

Overview
NameCN186010
Unique NameCN186010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig199 contig Csv1_Contig199:282..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.994e-53
Identity = 102/151 (67.55%), Postives = 119/151 (78.81%), Query Frame = -2
Query:  267 ALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 701
            ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL            +LVIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT+VE+KVIDVQI
Sbjct:   84 ALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.446e-51
Identity = 100/153 (65.36%), Postives = 121/153 (79.08%), Query Frame = -2
Query:  267 TALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 704
            TA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL            +LVIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKTKVERKVIDVQ+
Sbjct:   30 TAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.419e-51
Identity = 103/150 (68.67%), Postives = 117/150 (78.00%), Query Frame = -2
Query:  267 ALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 701
            ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL            VLVIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKTKVE+KV DV+I
Sbjct:   92 ALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.308e-50
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -2
Query:  267 LDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 698
            +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL            VLVIKGE + E++     G S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKTKVERKVIDVQI
Sbjct:   78 MDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.803e-46
Identity = 93/151 (61.59%), Postives = 115/151 (76.16%), Query Frame = -2
Query:  267 TALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGG-----ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 704
            +++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+            VLVIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKTK+ER VIDVQI
Sbjct:   83 SSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 88/160 (55.00%), Postives = 108/160 (67.50%), Query Frame = -2
Query:  267 TALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 704
            +ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AELKNGVL +++PKT+VERKVIDVQ+
Sbjct:   80 SALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.686e-40
Identity = 84/154 (54.55%), Postives = 99/154 (64.29%), Query Frame = -2
Query:  267 DISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGG-----------ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 695
            DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD RL LPD C+K +V+AELKNGVL +S+PK + ERKVIDVQ+
Sbjct:   84 DISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = -2
Query:  285 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSS----YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 677
            + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG    S    + +R+ LPD   K D++KAE+KNGVL + IPK K + +
Sbjct:   68 VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = -2
Query:  285 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSS--YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 677
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE    S     + +R++LP+   K D++KAE+KNGVL + IPK K + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = -2
Query:  264 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERKVIDVQIL 677
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL             L+IK E   E         Y +R++L  N  K D +KAE+KNGVL +++PK K E K    Q++
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
The following BLAST results are available for this feature:
BLAST of CN186010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS21C_SOLLC8.994e-5367.55Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN6.446e-5165.36Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY8.419e-5168.67Small heat shock protein, chloroplastic OS=Petunia... [more]
HS25P_ARATH9.308e-5067.7925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA2.803e-4661.59Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS26P_ORYSJ3.001e-4055.0026.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT6.686e-4054.55Small heat shock protein, chloroplastic OS=Triticu... [more]
HS23M_ARATH7.193e-1838.2423.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.039e-1636.5723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU6.733e-1633.81Small heat shock protein, chloroplastic OS=Chenopo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186010 ID=CN186010; Name=CN186010; organism=Citrus sinensis; type=EST; length=705bp
TTCTCAATTTACTTATGCACTTAAAAAGCTGGACATGTAGATCACAAAAC
CTTAACATACACATTGCGCTAGGCACACATCATTATAATTACAGGATCTG
AACATCAATGACCTTGCGCTCCACATGGGTCTTAGGAATTGAAATGTAAA
GAACACCATTCGTCAGCTCTGCATCTCAATTTATTTATACACTTACAAAG
CTGGACATGTAGATCACAAAACCTCAACATACACATTTCGCTAGGCACTC
ATTATTATAATTACAGAATCTGAACATCAATGACCTTGCGCTCCACCTTT
GTCTTAGGAATTGAAATGTAAAGAACACCATTCTTGAGCTCTGCCTTGAC
CTTATCTTTCTCACAGTTATCAGGAAGCTGGAGACGAGTATCGTAAGAGC
TAAAACTTGCACCTCCAGCTTCTTCTGCCCTGTGCTCTCCTTTAATGACA
AGGACTTCATCTTCCACCGACACTTTGACATCCTCCTTAGAGAGTCCAGG
CATGTCAAATCTCATTTTGATCTCATTTTCCTCCTCTTTGATGTCCCACG
GTGTTCTCACCTGGCCTCCCCCGCCAGCCCGGCTCCTCCCCGGAAAAGCC
ATCGTATCCTCTAATAGACGGTCCATTGTGTCCAGCATCTGCCGCATTGT
CCTCGTTGGAAACGAGGGATCCATCAAACCGAAAGGTGAAATATCGAGAG
CCGTT
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