CN186009

Overview
NameCN186009
Unique NameCN186009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12388 contig Csv1_Contig12388:231..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.801e-50
Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = -3
Query:  497 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRL 805
            KGPWTPEED++L++ IQR GHGNWRALPKQAGL+RCGKSCRLRWINYLRPDIKRGNFSK+EE+TI+ LH +LGNRWS IAARLPGRTDNEIKN WH+HLKKRL
Sbjct:   14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.296e-44
Identity = 80/134 (59.70%), Postives = 104/134 (77.61%), Query Frame = -3
Query:  404 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHSDHNSNATVHKP 805
            +GPWT EED+IL+SFI++ G G WR+LPK+AGL+RCGKSCRLRW+NYLRP +KRG  + DEE+ IL+LHR+LGNRWS IA R+PGRTDNEIKNYW++HL+K+L +  I P+          H   ++N  +HKP
Sbjct:   25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQ---------THKPLDAN-NIHKP 148          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.632e-43
Identity = 76/105 (72.38%), Postives = 93/105 (88.57%), Query Frame = -3
Query:  491 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQ 805
            +G WTP+ED  LI++IQ+ GH NWRALPKQAGL+RCGKSCRLRWINYLRPD+KRGNF+ +EEE I++LH +LGN+WS IAA LPGRTDNEIKN W++HLKK++ Q
Sbjct:   16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQ 120          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.132e-43
Identity = 87/180 (48.33%), Postives = 115/180 (63.89%), Query Frame = -3
Query:  299 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHS-----------DHNSNATVHKPVCNSTHQGIQNHPQDTPNFPPKSCNESTDIASENL 805
            KG WT EEDQ LI++I+  G G WR+LPK AGL+RCGKSCRLRWINYLRPD+KRGNF+++E+E I+KLH +LGN+WS IA  LPGRTDNEIKNYW++H+K++L    I P+    +  A   +           D  ++ +  K +C  T     N    T +     CN ST   S++L
Sbjct:   14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQTHRSLNSATTTATATPTVNNSCLDFRTSPSNSKNICMPTTDNNNNSSSSTDD---TKCNSSTTEESQSL 190          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.749e-43
Identity = 85/166 (51.20%), Postives = 108/166 (65.06%), Query Frame = -3
Query:  308 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHSDHNSNATVHKPVCNSTHQGIQNHPQDTPNFPPKSCNESTDIAS 805
            KG WT EEDQ L+ +I+  G G WR+LPK AGL+RCGKSCRLRWINYLRPD+KRGNF+ DE++ I+KLH +LGN+WS IA RLPGRTDNEIKNYW++H+K++L  + I P+          H   N + TV   V          +        PK+ N S + AS
Sbjct:   14 KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQ---------THRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTENSSDNGAS 170          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.058e-42
Identity = 79/139 (56.83%), Postives = 105/139 (75.54%), Query Frame = -3
Query:  389 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHSDHNSNATVHKPVCNST 805
            KG WT EED+ L+++I+  G G WR+LPK AGL+RCGKSCRLRWINYLRPD+KRGNF+++E+E I+KLH +LGN+WS IA RLPGRTDNEIKNYW++H++++L    I P     I ++    D  S  T  +PV ++T
Sbjct:   14 KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESSASQD--SKPTQLEPVTSNT 150          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.382e-42
Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  413 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHSDHNSNATV 805
            KG WT EEDQ+L+ +I++ G G WR+LP+ AGL RCGKSCRLRW+NYLRPD+KRGNF+++E+E I+KLH +LGN+WS IA RLPGRTDNEIKNYW++H+K++L    I P     I ++++      N  V
Sbjct:   14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINESVVSPSSLQNDVV 144          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.805e-42
Identity = 80/132 (60.61%), Postives = 100/132 (75.76%), Query Frame = -3
Query:  413 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHSDH-NSNATV 805
            KG WT EED  L ++I+  G G WR+LPK AGL+RCGKSCRLRWINYLRPD+KRGNFS +E+E I+KLH +LGN+WS IA RLPGRTDNEIKNYW++H++++L    I P     +    I+SDH  SN T+
Sbjct:   14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDP-----VTHRAINSDHAASNITI 140          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.858e-42
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = -3
Query:  401 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISPKQQCDIVQALIHSDHNSNATVHKPV 805
            KG WT EED  LIS+I+  G G WR+LP+ AGL RCGKSCRLRWINYLRPD+KRGNF+ +E++ I+KLH +LGN+WS IA RLPGRTDNEIKNYW++H+K++L +  I P     I +     D + ++    P+
Sbjct:   14 KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETKTSQDSSDSSKTEDPL 148          
BLAST of CN186009 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.995e-41
Identity = 72/110 (65.45%), Postives = 92/110 (83.64%), Query Frame = -3
Query:  476 KGPWTPEEDQILISFIQRFGHGNWRALPKQAGLMRCGKSCRLRWINYLRPDIKRGNFSKDEEETILKLHRVLGNRWSTIAARLPGRTDNEIKNYWHSHLKKRLKQNLISP 805
            KG WT EED  L+++I+  G G WR+LPK AGL+RCGKSCRLRWINYLRPD+KRGNF+++E+E I+KLH +LGN+WS IA RLPGRTDNEIKNYW++H++++L    I P
Sbjct:   14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDP 123          
The following BLAST results are available for this feature:
BLAST of CN186009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB4_ORYSJ1.801e-5084.47Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB5_ARATH4.296e-4459.70Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB1_MAIZE1.632e-4372.38Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB30_ANTMA2.132e-4348.33Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH4.749e-4351.20Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB4_ARATH1.058e-4256.83Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB3_ARATH1.382e-4257.25Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB1_HORVU1.805e-4260.61Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB32_ARATH6.858e-4256.30Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB08_ANTMA1.995e-4165.45Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186009 ID=CN186009; Name=CN186009; organism=Citrus sinensis; type=EST; length=807bp
GGGCAGCGGGCCCCCTGAGTTTTTTTTTTTTTTTTAAGATCACTTCGAAC
CTACTTTTATATAAAACCATTTACTCGCCAAATACAATAACATGAGCTTA
CAATATTACTTTTGAGCTGAAAAAAAAAATAGTATACAATGCATGAAACT
AGTGCCCTGAATTTTCCTGCATTTCTATTGAGTTTCCAGAATTCATTAAA
ATATTATACCAAAATTCCATGACATTAGAACAATTCTCGTAGTTCATTTT
TTCCATTGCAGCAAAATCTCTTGTCTCATATTTCCCTTCGATTCCAGGCA
AGTTTTCTGAAGCAATATCTGTGCTCTCATTGCAGGACTTTGGTGGAAAA
TTTGGTGTATCTTGAGGATGATTTTGAATTCCTTGATGGGTGGAATTGCA
TACTGGCTTATGTACAGTCGCATTGCTATTATGATCACTGTGGATTAATG
CTTGAACAATATCACACTGTTGTTTGGGGGAGATCAAGTTTTGTTTAAGT
CTCTTCTTCAAGTGACTGTGCCAATAATTCTTTATCTCATTGTCTGTTCG
TCCTGGTAATCTTGCTGCAATTGTCGACCATCTATTGCCAAGAACTCGAT
GCAGCTTGAGGATAGTTTCTTCTTCATCCTTGCTAAAGTTTCCCCGTTTA
ATATCTGGCCGCAAGTAATTTATCCATCGTAGTCTACAGCTCTTTCCACA
TCTCATTAAACCGGCTTGTTTGGGAAGAGCACGCCAATTGCCGTGGCCAA
ATCTTTGAATGAAAGAAATTAATATTTGATCCTCTTCAGGAGTCCATGGT
CCTTTCT
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