CN186003

Overview
NameCN186003
Unique NameCN186003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186003 vs. ExPASy Swiss-Prot
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37
Identity = 89/210 (42.38%), Postives = 125/210 (59.52%), Query Frame = -1
Query:  219 HRVRISASVLRSWAHKNPIPSSLRIPN-----------------QGIVVYFTSLRVVRRTYEDCRTVRSILRGFRVPIDERDLPMDNKFLDELQGIIGGCNNNHSRSLSLPRVFIGGRYIGGAEEIKRMNETGELLQLISGLQLV--GS----TFCDFCGGLRFILCEECSGSHKIYTE---------KYGFRSCTACNVNGLIRCPSCC 752
            H V +S  + +S  H+N + SS R+ +                 + +V+YFTSLR +R+TYEDC  +R IL+   + IDERD+ M + F DEL+ ++ G  NN    ++LPRVF+G +Y+GG EEIK++NE GEL +LI   ++V  GS      C+ CG +RF+ CE CSGS K+Y E         +YGF+ C  CN NGLIRC  CC
Sbjct:  182 HDVAVSFDLPKSRFHEN-VKSSCRVDDLDPPDIVSRFKRKTLGKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNN-GVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVCC 389          
BLAST of CN186003 vs. ExPASy Swiss-Prot
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 75/181 (41.44%), Postives = 109/181 (60.22%), Query Frame = -1
Query:  219 IPNQGIVVYFTSLRVVRRTYEDCRTVRSILRGFRVPIDERDLPMDNKFLDELQGIIGGCNNNHSRSLSLPRVFIGGRYIGGAEEIKRMNETGELLQLISGLQLV------GSTFCDFCGGLRFILCEECSGSHKIYTE---------------------KYGFRSCTACNVNGLIRCPSCC 680
            +  + +++YFTSLR +R+TYE+   VR IL+   + +DERD+ M + F DEL+ ++G    N    ++LPRVF+G +YIGGAEEI+++NE G+L +L+ G + V          C+ CG +RF+ CE CSGS K+Y E                     +YGF++C  CN NGLIRCP CC
Sbjct:  248 VGKERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGE-KFNKGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVCC 427          
BLAST of CN186003 vs. ExPASy Swiss-Prot
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.069e-24
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = -1
Query:  222 IVVYFTSLRVVRRTYEDCRTVRSILRGFRVPIDERDLPMDNKFLDELQGIIGGCNNNHSRSLSLPRVFIGGRYIGGAEEIKRMNETGELLQLISGLQLVGSTF-CDFCGGLRFILCEECSGS-----HKIYTEKYGFRSCTACNVNGLIRCPSC 665
            +V+Y T LRVVR T+E C  VR I +  RV  +E+++ ++ ++  EL           S + SLP VFI G Y+GGAE+I  MNE+GEL  +++ ++ V     C  CGG  F+ C  C GS        +T+ +    CTACN NGL RC +C
Sbjct:  139 VVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERC----RRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALKCTACNENGLQRCKNC 288          
BLAST of CN186003 vs. ExPASy Swiss-Prot
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = -1
Query:  222 IVVYFTSLRVVRRTYEDCRTVRSILRGFRVPIDERDLPMDNKFLDELQGIIGGCNNNHSRSLSLPRVFIGGRYIGGAEEIKRMNETGELLQLISGLQLVGSTF-CDFCGGLRFILCEECSGS-----HKIYTEKYGFRSCTACNVNGLIRCPSC 665
            +V+Y T LRVVR T+E C  VR I +  RV  +E+++ ++  +  EL           S + SLP VFI G Y+GGAE+I  MNE+GEL  L++ ++ V     C  CGG  F+ C  C GS        +T+ +    CTACN NGL RC +C
Sbjct:  139 VVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERC----RRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALKCTACNENGLQRCKNC 288          
BLAST of CN186003 vs. ExPASy Swiss-Prot
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = -1
Query:  222 IVVYFTSLRVVRRTYEDCRTVRSILRGFRVPIDERDLPMDNKFLDELQGIIGGCNNNHSRSLSLPRVFIGGRYIGGAEEIKRMNETGELLQLISGLQLVGSTF-CDFCGGLRFILCEECSGSHKI-----YTEKYGFRSCTACNVNGLIRCPSC 665
            +V+Y TS+ ++R TY  C  V+ ILR   V  +ERD+ M  ++  E++          S  + +P++++ G++IG AE ++RMNE+GEL QL+   + + ST+ C  CGG R + C  C+GS K      +T ++    C  C+  GL++C +C
Sbjct:  307 VVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMR------QRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454          
BLAST of CN186003 vs. ExPASy Swiss-Prot
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = -1
Query:  222 IVVYFTSLRVVRRTYEDCRTVRSILRGFRVPIDERDLPMDNKFLDELQGIIGGCNNNHSRSLSLPRVFIGGRYIGGAEEIKRMNETGELLQLISGLQLVGSTF-CDFCGGLRFILCEECSGSHKI-----YTEKYGFRSCTACNVNGLIRCPSC 665
            +V+Y TS+ ++R TY  C  V+ ILR   +  +ERD+ M  ++  E++            ++ +P++F+ G+ IG A  ++R+NE+GEL QL+   + + + + C  CGG R + C  C+GS K      +T ++    C  C+  GLI+CP+C
Sbjct:  435 VVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMR------ERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582          
The following BLAST results are available for this feature:
BLAST of CN186003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y5986_ARATH2.149e-3742.38Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
Y3885_ARATH2.904e-3441.44Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
GRCR1_HUMAN6.069e-2439.61Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_MOUSE7.927e-2440.26Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_DROME1.653e-2134.42Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR2_DROME1.399e-2032.47Glutaredoxin domain-containing cysteine-rich prote... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186003 ID=CN186003; Name=CN186003; organism=Citrus sinensis; type=EST; length=779bp
CCTCACTTCAATAAAATACATTGTGAGGGTACATGTGAAACTATTAACAC
CTATTATATTTGTCACACGTCCATAATCATAATGTCACTATCCAAAAATA
AACGTGGGTTATTTTCCTTAACTGCTATAAAAGGAGAAAAAAAAGAAAAA
GAAAATAACCCTATTTTTCTATACTTTTTGTCCTGAAGCTACAATCAGGT
GCATCGGCGGAGCACGGGACAGCAGGAAGGACACCTGATCAGACCGTTGA
CGTTACAAGCCGTGCAACTCCTGAACCCGTACTTCTCCGTATAGATCTTA
TGACTCCCGCTGCACTCTTCACAGAGAATAAATCTCAGCCCTCCACAGAA
ATCACAGAAAGTTGAGCCCACAAGCTGGAGCCCACTGATGAGCTGTAACA
ACTCCCCAGTCTCGTTCATCCGTTTAATCTCCTCGGCCCCACCTATGTAT
CTCCCGCCAATGAAAACTCTAGGCAGGCTCAAGCTTCTACTATGATTATT
GTTACAACCGCCAATGATACCCTGCAGCTCGTCCAGGAACTTGTTATCCA
TGGGCAAATCTCGTTCGTCGATCGGGACACGGAATCCGCGGAGGATTGAT
CTGACGGTCCTGCAGTCCTCGTAAGTCCTGCGGACAACGCGGAGGCTGGT
GAAGTACACGACAATGCCTTGGTTGGGGATTCTGAGGGACGAAGGGATTG
GGTTTTTGTGGGCCCAGGAGCGGAGGACAGAAGCGGAGATCCTGACCCGG
TGGAAAACGGAGGGGCTTCTGGGGGACCT
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