CN186001

Overview
NameCN186001
Unique NameCN186001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186001_ssr117 microsatellite CN186001_ssr117:117..134. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186001_ssr6 microsatellite CN186001_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186001_ssr56 microsatellite CN186001_ssr56:56..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186001 vs. ExPASy Swiss-Prot
Match: CLPT1_BOVIN (Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21
Identity = 67/200 (33.50%), Postives = 105/200 (52.50%), Query Frame = 2
Query:  224 ITGVI-RIAVFWYFASKFF---APKRPAGPESAQLMS--NLFQRGEYLDMWLYVSEHEKFNDFGNEGALIWHETNMPYAVWSRESTRTLSLKYYP----TEALKNNGSLYVHVFFARSGYPPDPNDPE-YQPLAVFGKTHSIVVYYPKSKADKRRSLLRNPKDSEEAQPLVQAVDDPQGDSEDDGPVEWISFWKPNITIN 790
            I GV+ RI + W  +S F    AP+  AGP  A  ++  NLF +   +++ +Y+SEHE F DF    AL W + ++ Y  W+         +++      ++++ NGS+Y+HV+F +SG+ PDP     Y+ LA    +  ++  Y + +  K ++LL       EA P      +    +ED GPVE IS W PNITIN
Sbjct:   56 IKGVLFRIFIIWAISSWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQQDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSR-MINKYKRRRFQKTKNLLTG---ETEADP------EMIKRAEDYGPVEVISHWHPNITIN 245          
BLAST of CN186001 vs. ExPASy Swiss-Prot
Match: CLPT1_HUMAN (Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.455e-21
Identity = 67/200 (33.50%), Postives = 105/200 (52.50%), Query Frame = 2
Query:  224 ITGVI-RIAVFWYFASKFF---APKRPAGPESAQLMS--NLFQRGEYLDMWLYVSEHEKFNDFGNEGALIWHETNMPYAVWSRESTRTLSLKYYP----TEALKNNGSLYVHVFFARSGYPPDPNDPE-YQPLAVFGKTHSIVVYYPKSKADKRRSLLRNPKDSEEAQPLVQAVDDPQGDSEDDGPVEWISFWKPNITIN 790
            I GV+ RI + W  +S F    AP+  AGP  A  ++  NLF +   +++ +Y+SEHE F DF    AL W + ++ Y  W+         +++      ++++ NGS+Y+HV+F +SG+ PDP     Y+ LA    +  ++  Y + +  K ++LL       EA P      +    +ED GPVE IS W PNITIN
Sbjct:   56 IKGVLFRIFIIWAISSWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSR-MINKYKRRRFQKTKNLLTG---ETEADP------EMIKRAEDYGPVEVISHWHPNITIN 245          
BLAST of CN186001 vs. ExPASy Swiss-Prot
Match: CLPT1_DANRE (Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.453e-20
Identity = 66/201 (32.84%), Postives = 103/201 (51.24%), Query Frame = 2
Query:  224 ITGVI-RIAVFWYFASKFFA------PKRPAGPESAQLMSNLFQRGEYLDMWLYVSEHEKFNDFGNEGALIWHETNMPYAVWSRESTRTLSLKYYP----TEALKNNGSLYVHVFFARSGYPPDP-NDPEYQPLAVFGKTHSIVVYYPKSKADKRRSLLRNPKDSEEAQPLVQAVDDPQGDSEDDGPVEWISFWKPNITIN 790
            I GV+ RI + W  +S F        P  PAG        NLF +   +D+++Y+S+ E F DF N   L W++ ++ Y  W+   +     +YY     +E++K NGS+Y+H++F +SG+ PDP    +Y+ L+    T  ++  Y + K  K ++LL       EA P      +    +E  GPVE IS W PN+TIN
Sbjct:   54 IKGVLFRIFIIWAISSWFRRGPSTPDPNTPAGAPRVP-SRNLFPKDTLMDLYVYISQSEIFTDFNNTEELFWYQQDLVYGEWTTGDSGDGCYEYYKELDLSESVKQNGSIYMHIYFTKSGFHPDPKRKGQYRRLSTVHATR-MLNKYKRRKFLKTKNLLTG---ETEADP------EMIKRAESHGPVEIISHWHPNLTIN 243          
BLAST of CN186001 vs. ExPASy Swiss-Prot
Match: CLPT1_MOUSE (Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.204e-20
Identity = 65/200 (32.50%), Postives = 105/200 (52.50%), Query Frame = 2
Query:  224 ITGVI-RIAVFWYFASKFF---APKRPAGPESAQLMS--NLFQRGEYLDMWLYVSEHEKFNDFGNEGALIWHETNMPYAVWSRESTRTLSLKYYP----TEALKNNGSLYVHVFFARSGYPPDPNDPE-YQPLAVFGKTHSIVVYYPKSKADKRRSLLRNPKDSEEAQPLVQAVDDPQGDSEDDGPVEWISFWKPNITIN 790
            I GV+ RI + W  +S F    +P+  +GP  A  ++  NLF +   +++ +Y+SEHE F DF    AL W + ++ Y  W+         +++      ++++ NGS+Y+HV+F +SG+ PDP     Y+ LA    +  ++  Y + +  K ++LL       EA P      +    +ED GPVE IS W PNITIN
Sbjct:   56 IKGVLFRIFIIWAISSWFRRGPSPQDQSGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSR-MINKYKRRRFQKTKNLLTG---ETEADP------EMIKRAEDYGPVEVISHWHPNITIN 245          
The following BLAST results are available for this feature:
BLAST of CN186001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CLPT1_BOVIN4.943e-2133.50Cleft lip and palate transmembrane protein 1 homol... [more]
CLPT1_HUMAN6.455e-2133.50Cleft lip and palate transmembrane protein 1 OS=Ho... [more]
CLPT1_DANRE2.453e-2032.84Cleft lip and palate transmembrane protein 1 homol... [more]
CLPT1_MOUSE3.204e-2032.50Cleft lip and palate transmembrane protein 1 homol... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186001 ID=CN186001; Name=CN186001; organism=Citrus sinensis; type=EST; length=792bp
CCCCTAATAAATAAATAAACAACAAATCACAAATAAATATAATTGTTCGG
ATCGCCTTTTCTTTTCTTTTTAAACTTTGTTTGCATCTCAGTTTTACTTC
ACCAGTGAACTGAGAGAGAAGAAGAAGAAGAAGATGGCGCCGCCACCACC
AGCACAAGCCGCCGGAGGCGGAGGAGGAGGCCAACAACAGAGGCAGCAAC
AAGCCGGAGGTCTCGGACAAACAATAACCGGAGTCATTAGAATCGCTGTC
TTTTGGTACTTCGCTTCCAAATTTTTCGCTCCCAAACGACCTGCTGGCCC
CGAGTCTGCTCAGCTCATGTCCAATCTCTTCCAAAGGGGAGAGTACTTGG
ACATGTGGTTATATGTTTCTGAACATGAAAAGTTCAATGACTTTGGTAAT
GAAGGCGCACTTATTTGGCATGAGACTAATATGCCTTATGCTGTTTGGAG
CAGAGAAAGTACCCGGACTCTTTCTTTGAAGTACTATCCAACTGAGGCTT
TGAAGAATAACGGGAGTCTGTACGTACATGTGTTCTTTGCGCGCTCTGGT
TACCCTCCGGACCCTAATGATCCTGAGTATCAACCTCTTGCAGTGTTTGG
GAAGACACACTCTATTGTGGTATATTATCCCAAGTCAAAAGCTGACAAAA
GGAGGAGTCTGCTCAGGAATCCCAAGGACTCTGAAGAGGCTCAGCCATTG
GTTCAGGCTGTTGATGACCCTCAAGGTGATTCTGAAGATGATGGCCCTGT
GGAATGGATTTCATTTTGGAAACCAAATATTACTATTAACTT
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