CN185979

Overview
NameCN185979
Unique NameCN185979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7001 contig Csv1_Contig7001:294..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185979 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.186e-41
Identity = 85/171 (49.71%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  103 STPAN-FIRNSCRATRYPALCVQCLSGYGHAIRNEHQ-LAVTXXXXXXXXXXXXXXFVGKLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSNVQTWVSAALTDENTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALVNRFAARHQ 609
            + PAN FI+ SC  T YPA+C Q LS Y   I+N  Q LA T              F+ +L K +G+K R++ A+ DC+E + D +DR+S+S  E+ ++  A G DFT+ MSNV+TWVSAALTDE TC+DGF G+ MDG +K ++R +V  VA+VTSNALALVN FAA+H+
Sbjct:   22 AAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKHK 192          
BLAST of CN185979 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 47/157 (29.94%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  121 IRNSCRATRYPALCVQCL-SGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGKLTKVR-GIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSNVQTWVSAALTDENTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 585
            +R+SC +TRYP LC+  + +  G  + ++  +                  V KL K R G+  RE  A+ DC+E + + +D L ++V +L H+     +    H  +++T +S+A+T++ TCLDGF     D  V+ A+ +   +V  + SNALA++
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HL-YPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMI 213          
BLAST of CN185979 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12
Identity = 46/158 (29.11%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  121 IRNSCRATRYPALCVQCLSGYGHAIRN-EHQLAVTXXXXXXXXXXXXXXFVG--KLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSNVQTWVSAALTDENTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 585
            +++SC +TRYP LC   ++    A +    Q  V               + G  KL K   + KRE +A+ DC+E + + +D L ++V +L        +  + H  +++T +SAA+T++ TCLDGF     + +V+ A+     +V ++ SNALA++
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNK--KSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CN185979 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12
Identity = 46/158 (29.11%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  121 IRNSCRATRYPALCVQCLSGYGHAIRN-EHQLAVTXXXXXXXXXXXXXXFVG--KLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSNVQTWVSAALTDENTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 585
            +++SC +TRYP LC   ++    A +    Q  V               + G  KL K   + KRE +A+ DC+E + + +D L ++V +L        +  + H  +++T +SAA+T++ TCLDGF     + +V+ A+     +V ++ SNALA++
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNK--KSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CN185979 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 43/163 (26.38%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  103 STPANFIRNSCRATRYPALCVQCLSGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGK--LTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSNVQTWVSAALTDENTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALV 585
            ST    +++ C +T YP LC   ++  G       +  +               F  K  + K +G+  RE  A+ DC+E + + +D L  +V +L    +   +    H  +++T +S+A+T++ TCLDGF     D  V+ A+ +   +V  + SNALA++
Sbjct:   56 STSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQ--KSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMI 216          
The following BLAST results are available for this feature:
BLAST of CN185979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
21KD_DAUCA7.186e-4149.7121 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_ARATH8.279e-1329.94Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI1.844e-1229.11Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.844e-1229.11Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME2_ARATH9.154e-1226.38Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002C19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185979 ID=CN185979; Name=CN185979; organism=Citrus sinensis; type=EST; length=781bp
CGTGTTTGCCAAAGATATATGGCTAAGCTTTCCCTTTTCTCACTAGCTCT
CTTCTTCCACCTTTACTTGGCTGGAATGGCAGAATCTGCCATTCCCGGGC
ATTCCACTCCCGCAAACTTTATCAGAAATTCGTGTAGAGCCACTCGATAT
CCAGCGTTATGCGTTCAGTGCCTCTCAGGTTATGGTCATGCCATCCGAAA
TGAGCATCAGCTTGCTGTAACTGCCTTGTCAGTGAGCTTAAGCAGGGCAC
GGTCAGCTGCTGCTTTTGTGGGCAAGCTGACTAAAGTTAGGGGAATCAAG
AAGAGAGAGTTCCTAGCTGTGAAAGACTGCATAGAGAACATGGGTGACGG
CGTAGACCGACTTAGTCAATCCGTCAGGGAGCTTGGCCATGTGGGACGAG
CTGTCGGCCAGGACTTTACGTGGCACATGAGTAATGTGCAGACTTGGGTT
AGTGCCGCACTAACTGATGAGAACACTTGCTTAGATGGTTTTGATGGTCG
TTTCATGGATGGAAATGTAAAGGCTGCGATCAGGAGAAGGGTCACAAATG
TTGCCCAAGTCACTAGTAACGCTCTTGCTTTGGTTAATCGATTCGCCGCT
AGGCACCAAGCTGCAGCAGTCACCGAGAAGCCTTAGATTTCGTCTAAGGT
GACCTCTGCTGTCTTCTGTATAATATGGTATCTCAATATGATATCCCTTA
GGTTCGTGCTTAGTCTAGTTTCTGTCTTATATAAGAAAGTTTGGTTTTCT
GGGCAACCAACAAAAAGTACAGTCAGTATCT
back to top