CN185976

Overview
NameCN185976
Unique NameCN185976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig638 contig Csv1_Contig638:187..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.838e-81
Identity = 150/219 (68.49%), Postives = 181/219 (82.65%), Query Frame = 3
Query:  105 NMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFS 761
            +M  EE++RLKYL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P E+LK++D+KVD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+KYEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF            +CSEKYN TVV AAEKGY+V+SY+PLVPTERI+K+F+
Sbjct:   13 DMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFA 231          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.236e-69
Identity = 129/216 (59.72%), Postives = 165/216 (76.39%), Query Frame = 3
Query:  120 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNG 767
            EE+RLKYL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +PFELL F+DRKV+ S+ +L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF            Y SEKYNQ+V   AE+GY V+ YLPL+PTERIAKVF +G
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDG 231          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 114/234 (48.72%), Postives = 156/234 (66.67%), Query Frame = 3
Query:   66 ITMAEEKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVF 758
            I+   E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P +LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL               S +YN  V   A++G  V++YLPLVPTER+++VF
Sbjct:   10 ISNRPEEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 114/234 (48.72%), Postives = 156/234 (66.67%), Query Frame = 3
Query:   66 ITMAEEKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVF 758
            I+   E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P +LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL               S +YN  V   A++G  V++YLPLVPTER+++VF
Sbjct:   10 ISNRPEEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.969e-48
Identity = 107/215 (49.77%), Postives = 131/215 (60.93%), Query Frame = 3
Query:  120 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSN 764
            EE+RLKYL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P E +KF+D+ VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV               +  AK LY+  EPKAEQYAV  WR LN++PL             Y SEKYN  V    E+GY+VSSYLPL+PTE+I KVF +
Sbjct:    6 EEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV---------------QEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVFGD 201          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.621e-45
Identity = 102/190 (53.68%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  192 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFS 761
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P ELLK+ DRKV E    LD  VP  +K+V +QA           RSV SEV+  GV+                 AK +YSKYEP AEQ AVSAWRKLNQ+PLF            YC+EKYN+ +VS+AEKGY+VS+YLPLVPTE+IAKVFS
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQA-----------RSVVSEVRRDGVS---------------TFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.056e-40
Identity = 87/213 (40.85%), Postives = 126/213 (59.15%), Query Frame = 3
Query:  117 EEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKV 755
            ++E +LK+LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +PF+LL F+DRKVD+    ++  VP ++KQ  +QAL           +VA+EV+  GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF            Y SEKYN  V    ++ Y  + YLP++P E+I+ +
Sbjct:   36 DDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDI 226          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.358e-28
Identity = 81/215 (37.67%), Postives = 100/215 (46.51%), Query Frame = 3
Query:  120 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPK--AEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVF 758
            +E  LK+L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP+ K+V  QA      A   A+S   E +T G                 P A   Y+  E K      +V  W KLNQ                + S +YN  V      GY +  YLPLVP + I K +
Sbjct:    9 KEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG-----------------PKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAY 206          
BLAST of CN185976 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.637e-21
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 3
Query:   72 MAEEKNVPSQQNMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEV 458
            MAE+++  +QQ     + + LKYL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA + AP  ARS+AS +
Sbjct:    1 MAEDED--NQQG----QGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLASSL 123          
The following BLAST results are available for this feature:
BLAST of CN185976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH1.838e-8168.49REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI1.236e-6959.72Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ1.016e-5548.72REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.016e-5548.72REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR5.969e-4849.77Small rubber particle protein OS=Hevea brasiliensi... [more]
SRP_PHAVU3.621e-4553.68Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y2778_ARATH2.056e-4040.85REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
Y1736_ARATH2.358e-2837.67REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR1.637e-2144.19Rubber elongation factor protein OS=Hevea brasilie... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185976 ID=CN185976; Name=CN185976; organism=Citrus sinensis; type=EST; length=771bp
GCGTTCTCGAACAAGTTAAAAGGCTTCTTTTACGACGTCGTTCTCTCAGT
CATTCGTCAATCATCATCACCATGGCCGAAGAGAAGAACGTGCCGTCCCA
ACAAAACATGGATATTGAGGAGGAGCAGAGGCTGAAATATTTGGAGTTTG
TGCAAGTTGCCACAATCCATGTGTTGCTGTGCTTCCATAATCTATATGGT
TATGCTAAAGCCAAGTCCGGACCATTGAAACCTGGTGTGGAGTCCGTTGA
GGGGACAGTCAAGAATGTGGTTGGACCTGTTTATGATAAGTATCATGGTC
TCCCGTTTGAGCTCCTTAAGTTTATTGATCGCAAGGTGGATGAGTCTGTG
ACCAAGCTGGACTGCCGTGTGCCTCCAGTCCTCAAGCAAGTCCCTGCCCA
AGCTCTCTCCGCGGCTCAAATGGCTCCAGTAGTGGCACGATCCGTGGCTT
CTGAAGTGAAGACTGCCGGTGTAGCCGGCACCGCCTCAGGAATGGCAAAA
TCCGTTTACACCAAGTACGAGCCCGCAGCCAAGGAACTTTACTCCAAGTA
CGAACCAAAAGCGGAGCAATATGCTGTGTCAGCTTGGCGCAAGCTCAATC
AGATGCCACTATTCCCTCAAGTAGCTCAAGTTGTTGTGCCAACTGCTGCC
TATTGTTCTGAAAAATACAACCAAACAGTGGTGAGCGCTGCAGAGAAGGG
GTACAAGGTCTCCTCATATTTGCCTTTGGTCCCTACTGAGAGGATTGCTA
AGGTGTTCAGCAACGGGGTTG
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