CN185975

Overview
NameCN185975
Unique NameCN185975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig638 contig Csv1_Contig638:324..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.146e-79
Identity = 148/217 (68.20%), Postives = 178/217 (82.03%), Query Frame = -1
Query:  183 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSTGVVESQPL 833
            YL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P E+LK++D+KVD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+KYEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF           A+CSEKYN TVV AAEKGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct:   24 YLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.898e-66
Identity = 125/210 (59.52%), Postives = 159/210 (75.71%), Query Frame = -1
Query:  204 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSTG 833
            YL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +PFELL F+DRKV+ S+ +L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF           AY SEKYNQ+V   AE+GY V+ YLPL+PTERIAKVF  G
Sbjct:   22 YLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDG 231          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 9.143e-53
Identity = 111/220 (50.45%), Postives = 145/220 (65.91%), Query Frame = -1
Query:  174 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSTGVVESQPLASA 833
            YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P +LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A++G  V++YLPLVPTER+++VF        PLA A
Sbjct:   37 YLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.143e-53
Identity = 111/220 (50.45%), Postives = 145/220 (65.91%), Query Frame = -1
Query:  174 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSTGVVESQPLASA 833
            YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P +LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A++G  V++YLPLVPTER+++VF        PLA A
Sbjct:   37 YLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.114e-45
Identity = 103/190 (54.21%), Postives = 124/190 (65.26%), Query Frame = -1
Query:  210 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFS 779
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P ELLK+ DRKV E    LD  VP  +K+V +QA           RSV SEV+  GV+                 AK +YSKYEP AEQ AVSAWRKLNQ+PLF           AYC+EKYN+ +VS+AEKGY+VS+YLPLVPTE+IAKVFS
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQA-----------RSVVSEVRRDGVS---------------TFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.164e-45
Identity = 102/207 (49.28%), Postives = 124/207 (59.90%), Query Frame = -1
Query:  213 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVF 833
            YL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P E +KF+D+ VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV               +  AK LY+  EPKAEQYAV  WR LN++PL             Y SEKYN  V    E+GY+VSSYLPL+PTE+I KVF
Sbjct:   12 YLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV---------------QEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.871e-38
Identity = 84/206 (40.78%), Postives = 120/206 (58.25%), Query Frame = -1
Query:  216 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKV 833
            +LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +PF+LL F+DRKVD+    ++  VP ++KQ  +QAL           +VA+EV+  GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF            Y SEKYN  V    ++ Y  + YLP++P E+I+ +
Sbjct:   43 HLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDI 226          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.598e-27
Identity = 79/209 (37.80%), Postives = 97/209 (46.41%), Query Frame = -1
Query:  213 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPK--AEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVF 833
            +L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP+ K+V  QA      A   A+S   E +T G                 P A   Y+  E K      +V  W KLNQ               A+ S +YN  V      GY +  YLPLVP + I K +
Sbjct:   15 HLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG-----------------PKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAY 206          
BLAST of CN185975 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = -1
Query:  513 YLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPFELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEV 833
            YL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA + AP  ARS+AS +
Sbjct:   17 YLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLASSL 123          
The following BLAST results are available for this feature:
BLAST of CN185975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH1.146e-7968.20REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI1.898e-6659.52Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ9.143e-5350.45REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI9.143e-5350.45REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRP_PHAVU4.114e-4554.21Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR9.164e-4549.28Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH4.871e-3840.78REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
Y1736_ARATH6.598e-2737.80REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR2.685e-2046.73Rubber elongation factor protein OS=Hevea brasilie... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185975 ID=CN185975; Name=CN185975; organism=Citrus sinensis; type=EST; length=833bp
TTTTTTTTTTAGCATGTCTTTAAAAATTAAATAATCGTAATCCACTCCAT
TCCCTTTCCAATACACATATCCAGAAAGGAAAACATTTTCACTCCACAGC
TTGCAAGAAAAATCACGAGGCCAGAAAACAGAAAACACAGCTATCAATAC
ACAGCAACATCAGCTTCATGTCCAGCAGAAGCCAGAGGCTGCGATTCAAC
AACCCCGGTGCTGAACACCTTAGCAATCCTCTCAGTAGGGACCAAAGGCA
AATATGAGGAGACCTTGTACCCCTTCTCTGCAGCGCTCACCACTGTTTGG
TTGTATTTTTCAGAACAATAGGCAGCAGTTGGCACAACAACTTGAGCTAC
TTGAGGGAATAGTGGCATCTGATTGAGCTTGCGCCAAGCTGACACAGCAT
ATTGCTCCGCTTTTGGTTCGTACTTGGAGTAAAGTTCCTTGGCTGCGGGC
TCGTACTTGGTGTAAACGGATTTTGCCATTCCTGAGGCGGTGCCGGCTAC
ACCGGCAGTCTTCACTTCAGAAGCCACGGATCGTGCCACTACTGGAGCCA
TTTGAGCCGCGGAGAGAGCTTGGGCAGGGACTTGCTTGAGGACTGGAGGC
ACACGGCAGTCCAGCTTGGTCACAGACTCATCCACCTTGCGATCAATAAA
CTTAAGGAGCTCAAACGGGAGACCATGATACTTATCATAAACAGGTCCAA
CCACATTCTTGACTGTCCCCTCAACGGACTCCACACCAGGTTTCAATGGT
CCGGACTTGGCTTTAGCATAACCATATAGATTATGGAAGCACAGCAACAC
ATGGATTGTGGCAACTTGCACAAACTCCAAATA
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