CN185965

Overview
NameCN185965
Unique NameCN185965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig181 contig Csv1_Contig181:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.157e-71
Identity = 128/189 (67.72%), Postives = 154/189 (81.48%), Query Frame = -3
Query:  185 GIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLSHSPWL 751
            GIYD+  +KLVEKAK W VGDPFD   RQGPQVDK+QF++ILSYIEHGK EGA LLT           I+PTIF +VTEDM I ++EIFGPVM+LMKFKTVEE IK ANNT++GLAAGI+++D+++ NTVSRSI+AGIIW+NCYF FD DCPYGGYKMSG  R+ G+++L NYLQ KSVV PL +SPW+
Sbjct:  313 GIYDKVVEKLVEKAKDWTVGDPFDSTARQGPQVDKRQFEKILSYIEHGKNEGATLLTGGKAIGDKGYFIQPTIFADVTEDMKIYQDEIFGPVMSLMKFKTVEEGIKCANNTKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVMPLHNSPWM 501          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.929e-52
Identity = 97/183 (53.01%), Postives = 132/183 (72.13%), Query Frame = -3
Query:  200 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLS 748
            IYDEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+D+I+  IE GK+EGA L             I+PT+F+NVT++M IAK EIFGPV  +MKFK+++E IK ANNT +GLAAG+ TKDL+ A TVS +++AG +W+NCY A    CP+GG+KMSG GR+ G   LH Y +VK+V   +S
Sbjct:   54 IYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKIIDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKIS 236          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 204.912 bits (520), Expect = 3.826e-52
Identity = 93/183 (50.82%), Postives = 132/183 (72.13%), Query Frame = -3
Query:  200 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLS 748
            +YDEF K+ VE+AK +V+G+P  P + QGPQ+DK+Q D+IL  IE GK+EGA L             ++PT+F+NVT++M IAK EIFGPV  +MKFK+V++ IK ANNT +GLAAG+ TKDL+ A TVS +++AG++W+NCY    + CP+GG+KMSG GR+ G   L+ Y ++K+V   +S
Sbjct:  315 VYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKIS 497          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.899e-51
Identity = 94/188 (50.00%), Postives = 134/188 (71.28%), Query Frame = -3
Query:  185 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLSHSPWL 748
            +YDEF +K   +A   VVGDPF   + QGPQ+D KQF++++ YI+ G    A L             I+PT+F+NV +DMLIA++EIFGPV +++KF  V+E IK AN T++GLAAG+ TK+L+ AN VSR+++AG +W+NC+  FD+  P+GGYKMSG GR+ G+ SL+NYLQ+K+VVT L+   W+
Sbjct:  351 VYDEFVEKSKARALKRVVGDPFRKGIEQGPQIDLKQFEKVMKYIKSGIESNATLECGGDQIGDKGYFIQPTVFSNVKDDMLIAQDEIFGPVQSILKFSDVDEVIKRANETKYGLAAGVFTKNLDTANRVSRALKAGTVWVNCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQIKAVVTALNKPAWI 538          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.480e-51
Identity = 94/178 (52.81%), Postives = 128/178 (71.91%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            IYDEF ++ +E+AK + +GDP  P V+QGPQ+DK+QF +IL  IE GK+EGA L             I+PT+F+NVT+DM IAK EIFGPV  +MKFKT++E IK ANNT +GLAA + TKD++ A T + +++AG +W+NCY AF + CP+GG+KMSG GR+ G   L  Y +VK+V
Sbjct:  323 IYDEFVRRSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTV 500          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.230e-51
Identity = 91/183 (49.73%), Postives = 131/183 (71.58%), Query Frame = -3
Query:  200 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLS 748
            +YDEF +K VE+AK +V+G+P    + QGPQ+DK+Q D+IL  IE GK+EGA L             ++PT+F+NVT++M IAK EIFGPV  +MKFK++++ IK ANNT +GLAAG+ TKDL+ A TVS +++AG++W+NCY    + CP+GG+KMSG GR+ G   L+ Y ++K+V   +S
Sbjct:  315 VYDEFVRKSVERAKKYVLGNPLTQGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKIS 497          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 9.423e-51
Identity = 90/183 (49.18%), Postives = 131/183 (71.58%), Query Frame = -3
Query:  200 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLS 748
            IYDEF ++ VE+AK +++G+P  P V QGPQ+DK+Q+D+IL  IE GK+EGA L             ++PT+F+NVT++M IAK EIFGPV  +MKFK++++ IK ANNT +GL+AG+ TKD++ A T+S +++AG +W+NCY    + CP+GG+KMSG GR+ G    H Y +VK+V   +S
Sbjct:  315 IYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKIS 497          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.607e-50
Identity = 94/188 (50.00%), Postives = 131/188 (69.68%), Query Frame = -3
Query:  185 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLSHSPWL 748
            +YDEF +K   +A    VGDPF   + QGPQVD +QF++IL YI+HG   GA L             I+PT+F++V +DMLIA +EIFGPV  ++KFK ++E I  ANN+R+GLAAG+ T++L+ A+ + R++R G +WINC+   D+  P+GGYKMSG GR+ G+ SL+NYLQVK+VVT L +  WL
Sbjct:  347 VYDEFVEKAKARALKRNVGDPFKSGIEQGPQVDSEQFNKILKYIKHGVEAGATLQAGGDRLGSKGYYIQPTVFSDVKDDMLIATDEIFGPVQTILKFKDLDEVIARANNSRYGLAAGVFTQNLDTAHRLMRALRVGTVWINCFDVLDASIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTSLKNPAWL 534          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.676e-50
Identity = 91/183 (49.73%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  200 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLS 748
            IYDEF ++ VE+AK +V+G+P D  + QGPQ+DK+Q  +IL  IE GK+EGA L             ++PT+F+NVT++M IAK EIFGPV  +MKFK+++E IK ANNT +GLAAG+ TKDL+ A TVS +++AG +W+NCY      CP+GG+KMSG GR+ G + ++ Y ++K+V   +S
Sbjct:  315 IYDEFVRRSVERAKKYVLGNPLDSGISQGPQIDKEQHAKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDEVIKRANNTPYGLAAGVFTKDLDRAITVSSALQAGTVWVNCYLTLSVQCPFGGFKMSGNGREMGEQGVYEYTELKTVAMKIS 497          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.676e-50
Identity = 90/183 (49.18%), Postives = 132/183 (72.13%), Query Frame = -3
Query:  200 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPLS 748
            IYDEF ++ VE+AK +++G+P +  + QGPQ+DK+Q ++IL  IE GK+EGA L             ++PT+F+NVT++M IAK EIFGPV  +MKFK++++ IK ANNT +GLAAG+ TKDL+ A TVS +++AG++W+NCY A    CP+GG+KMSG GR+ G   L+ Y ++K+V   +S
Sbjct:  315 IYDEFVRRSVERAKKYILGNPLNSGINQGPQIDKEQHNKILGLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKRANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMQIS 497          
The following BLAST results are available for this feature:
BLAST of CN185965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
AL2C4_ARATH2.157e-7167.72Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH2_MACPR2.929e-5253.01Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
AL1A1_MOUSE3.826e-5250.82Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL2B4_ARATH1.899e-5150.00Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL1A1_CHICK2.480e-5152.81Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_RAT4.230e-5149.73Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_HUMAN9.423e-5149.18Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL2B7_ARATH1.607e-5050.00Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1A7_RAT4.676e-5049.73Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1A7_MOUSE4.676e-5049.18Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185965 ID=CN185965; Name=CN185965; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTAAATATCAATGTAGTATTAATATTATTCCCTTT
AGAGGTAATACAAAAACCCTTGTATCTTATGAGAGCCCTTTAATGAGAAT
AATTTGCAAACCCCAAACTCAGAAAGTCTTGCAACTTTAATCAGCCACCA
CTTATTTTTTCAAACCTGGGTGGGTAAGTGTTCACAGCCAAGGAGAATGG
GAAAGGGGAGTCACAACGGACTTGACCTGCAAATAGTTATGTAGAGATTC
CAGTCCACAGTCTCTACCAAATCCACTCATCTTGTATCCTCCGTAAGGGC
AGTCGCTGTCAAAAGCAAAATAACAATTGATCCATATAATGCCTGCTCGA
ATTGATCTAGAGACGGTATTAGCCACATTCAAGTCCTTTGTCATAATGCC
TGCTGCTAGGCCATGTCGGGTATTATTTGCACTCTTAATTGCCTCCTCAA
CAGTCTTGAATTTCATCAATGCCATCACAGGTCCGAAAATTTCATTCTTT
GCTATCAGCATGTCTTCCGTAACATTTGTGAAAATTGTAGGCTCAATATA
ATACCCCTTCTTGCCGATAGGCTTACCCCCTGTTAACAATGGGGCTCCTT
CCCTCTTGCCATGCTCAATGTACGAAAGAATTCTATCGAACTGCTTCTTA
TCGACCTGGGGTCCTTGACGAACTGCAGGATCAAAAGGATCACCAACTAC
CCAAGCTTTTGCCTTTTCGACCAACTTCTTTTCAAATTCATCATAAATTC
CTT
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