CN185956

Overview
NameCN185956
Unique NameCN185956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:28..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: BCKD_RAT ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 72/234 (30.77%), Postives = 125/234 (53.42%), Query Frame = 1
Query:   28 AKKLS*TFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 729
            +K ++  +++S I+ V     ++ T   + Y    G      +LL S ++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L
Sbjct:   47 SKTVTSFYNQSAIDVVAEKPSVRLTPTMMLYS---GRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPL 269          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: BCKD_HUMAN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 68/203 (33.50%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  121 MMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 729
            M+  G      +LL SA++L +ELP+RIA R      LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L
Sbjct:   75 MLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPL 269          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: BCKD_BOVIN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 68/203 (33.50%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  121 MMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 729
            M+  G      +LL SA++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L
Sbjct:   75 MLYSGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEARYCQLVRQLLDDHKDVVTLLAEGLRESRKYI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPL 269          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: BCKD_MOUSE ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 66/203 (32.51%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  121 MMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 729
            M+  G      +LL S ++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      +D   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L
Sbjct:   75 MLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------QDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPL 269          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK_DROME ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 78/218 (35.78%), Postives = 110/218 (50.46%), Query Frame = 1
Query:  106 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH--NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY---GDPSFTFP----YVPSHL 729
            +S++  M+FG    +K   I   FL KELP+R+A    E+  LP  L    +V +V  WY+ SF D+  +     T D  + F   +  I+ RHN+VV  MA G+ ++K+    ++       I  FLDR YMSRI IRMLI QH  L   NP+     IG +D       V R+A E+A  +C + Y ++P   I     +P    P    YVPSHL
Sbjct:   33 LSIKQFMDFGQNACEKKSYI---FLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYEKAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTESSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSDVVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHL 247          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK3_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 81/236 (34.32%), Postives = 122/236 (51.69%), Query Frame = 1
Query:   67 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNI------YGDPSFTFPYVPSHL 729
            +++ R+     + +S++  ++FG     +    S  FL KELP+R+A    E+  LP  L  +P+V  V+ WY+ SF +L  + + +S  D +   +F Q++  ++ RHN+VVP MA G+ + K++   DP I       I  FLDRFY +RI  RMLI QH  L     NP  P H IG ID   +   V ++A E A  +C + Y  AP+  +        D      YVPSHL
Sbjct:   14 KQIERYSRFSPSPLSIKQFLDFGRDNACEKT--SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFI----STNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKH-IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHL 241          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK2_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 82/221 (37.10%), Postives = 113/221 (51.13%), Query Frame = 1
Query:  106 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNI--YGDPSFTFP----YVPSHL 729
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   S   V ++A + A  +C + Y ++PD  I      + T P    YVPSHL
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHL 245          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK2_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 80/221 (36.20%), Postives = 111/221 (50.23%), Query Frame = 1
Query:  106 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY------GDPSFTFPYVPSHL 729
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   S   V ++A + A  +C + Y ++PD  I        +      YVPSHL
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLGTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNANQPIHMVYVPSHL 245          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK2_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 79/221 (35.75%), Postives = 111/221 (50.23%), Query Frame = 1
Query:  106 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY------GDPSFTFPYVPSHL 729
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   +  +V ++A + A  +C + Y ++PD  I               YVPSHL
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHL 245          
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK3_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 81/236 (34.32%), Postives = 121/236 (51.27%), Query Frame = 1
Query:   67 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNI------YGDPSFTFPYVPSHL 729
            +++ R+     + +S++  ++FG     +    S  FL KELP+R+A    E+  LP  L  +P+V  V+ WY+ SF +L  + + +S  D R   +F  ++  I+ RHN+VVP MA G+ + K++   DP I       I  FLDRFY +RI  RMLI QH  L     NP  P H IG ID   +   V ++A E A  +C + Y  AP+  +        +      YVPSHL
Sbjct:   14 KQIERYSRFSPSPLSIKQFLDFGRDNACEKT--SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPRVLDNFLNVLINIRNRHNDVVPTMAQGVIEYKEKFGFDPFI----SSNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPAHPKH-IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPNKPIQVVYVPSHL 241          
The following BLAST results are available for this feature:
BLAST of CN185956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
BCKD_RAT1.063e-2730.77[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_HUMAN1.389e-2733.50[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_BOVIN2.368e-2733.50[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_MOUSE5.276e-2732.51[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
PDK_DROME6.450e-2535.78[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK3_HUMAN1.100e-2434.32[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_RAT1.100e-2437.10[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_MOUSE1.437e-2436.20[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_HUMAN1.877e-2435.75[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_MOUSE3.201e-2434.32[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185956 ID=CN185956; Name=CN185956; organism=Citrus sinensis; type=EST; length=729bp
CGTCAGAAGCCAGAAGCAGCAATGGCTGCTAAGAAATTGTCCTAGACGTT
TTCGAAGAGCTTGATCGAGGAGGTTGGGCGATGGGGATGCATGAAACAGA
CAGGTGTGAGCTTGAGGTACATGATGGAGTTTGGCTCAAAACCTACAGAC
AAGAATTTGCTAATTTCTGCTCAGTTTCTTCACAAAGAGCTTCCAATTAG
AATCGCCAGACGAGCAATTGAGCTCGAGACACTTCCTTACGGTTTATCCG
AGAAGCCTGCCGTTTTGAAGGTTCGAGACTGGTATTTGGACTCATTTCGT
GATTTGAGGTCGTTTCCTGACATCAGAAGTACGAGTGATGAGAGGGATTT
TACGCAAATGATTAAGGCGATTAAGGTGAGGCATAATAATGTGGTGCCCA
TGATGGCGTTGGGGCTGCAACAATTGAAGAAAGAGATGGATCCCAAGATT
GTTTACGAGGATCTTCATGAGATTCATCAGTTTCTGGATCGGTTTTACAT
GTCTAGGATCGGAATTCGTATGCTTATTGGGCAGCATGTAGAATTGCACA
ATCCCAACCCTCCACCTCATTGTATTGGCTACATAGACACAAAAATGTCT
CCAGTGCAGGTTGCTAGGAATGCTAGTGAGCATGCACATTGTGTTTGTCT
GCGGGAGTATGGCAGTGCACCCGATTTTAATATCTACGGTGATCCCAGTT
TTACATTCCCTTACGTCCCTTCACACTTG
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