CN185955

Overview
NameCN185955
Unique NameCN185955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:536..1349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.800e-51
Identity = 107/210 (50.95%), Postives = 147/210 (70.00%), Query Frame = -3
Query:  201 GIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYG--SAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRA-VEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL-DENTDLAADKGT--MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPL 812
            GIRML+GQ++ L +  P  + +G I T+ +  Q+   A+E+A  +C   YG   AP+  I  DPS    YV SHL+  VFE++KNSLRA VE   +DSD   PPI++IVA G ED+TIK+SDEGGGI R  +P +++Y+++TA   L D+  D+ +   T  MAG+G+GLP++RLY RYFGGDL++ISMEGYGTD Y+HL+RL +S EPL
Sbjct:  216 GIRMLLGQYIALVSEPPRENYVGVISTRANIYQIIEGAAENAKYICRLAYGLFEAPEIQIICDPSLEMMYVESHLNHAVFEILKNSLRATVEFHGVDSD-FFPPIKVIVAKGQEDITIKISDEGGGISRRNIPLVWSYMFTTASPTLTDDPHDIVSANSTTPMAGFGFGLPLARLYTRYFGGDLELISMEGYGTDVYIHLNRLCESAEPL 424          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK_DROME ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.948e-42
Identity = 99/229 (43.23%), Postives = 137/229 (59.83%), Query Frame = -3
Query:  156 IRMLIGQHVELH--NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY---GDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY-MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD-SQEPLP*ISTASKEIYGSPV 809
            IRMLI QH  L   NP+     IG +D       V R+A E+A  +C + Y ++P   I     +P    P    YVPSHL+ M+FEL KNS+RAV E +  D++   PP+++ +  G ED+ +K+SD+GGGIPRS   ++F Y+YSTA  P   +         +AGYGYGLPISRLYARYF GD+ ++S EG+GTDA ++L  L D + E LP  +  S + Y + V
Sbjct:  167 IRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSDVVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYMLFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIPRSQTDQLFKYMYSTAPQPSKSDLHTVP----LAGYGYGLPISRLYARYFHGDIVLLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATV 391          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK2_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.979e-40
Identity = 100/216 (46.30%), Postives = 133/216 (61.57%), Query Frame = -3
Query:  198 IRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 809
            IRMLI QH  +     NP  P H IG ID   S   V ++A + A  +C + Y ++PD  I        +      YVPSHL+ M+FEL KN++RA  E + +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct:  165 IRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNANQPIHMVYVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRRIERLFSYMYSTAPTPQP------GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK2_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.503e-40
Identity = 102/216 (47.22%), Postives = 135/216 (62.50%), Query Frame = -3
Query:  198 IRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY--GDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 809
            IRMLI QH  +     NP  P H IG ID   S   V ++A + A  +C + Y ++PD  I      + T P    YVPSHL+ M+FEL KN++RA  E + +S    PPI+I+VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct:  165 IRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH-ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQP------GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK2_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.503e-40
Identity = 98/216 (45.37%), Postives = 134/216 (62.04%), Query Frame = -3
Query:  198 IRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 809
            IRMLI QH  +     NP  P H IG ID   +  +V ++A + A  +C + Y ++PD  I               YVPSHL+ M+FEL KN++RA  E + +S  + PPI+++VA G ED++IK+SD GGG+P   + ++F+Y+YSTA  P           GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L  L  DS E LP
Sbjct:  165 IRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESH-ESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQP------GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.227e-39
Identity = 97/221 (43.89%), Postives = 136/221 (61.54%), Query Frame = -3
Query:  177 IRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPS------FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASK 809
            IRML  QH+ +     P  P H IG ID       V  +A E+A  +C R Y +AP   +    S       +   VPSHL+ ++FEL KNS+RA  E +  +D+  PPI+++V  G ED++IK+SD GGG+ R+ L ++FTY+YSTA  P  + T     +  +AGYGYGLP+SRLYARYF GD+ ++SMEGYGTDA + L  +  ++ E LP  ST+S+
Sbjct:  162 IRMLQNQHLVVFGVVLPESPRH-IGCIDPGCDVESVVHDAYENARFLCERYYLTAPGMKLEMHNSVNPGMPISIVAVPSHLYHIMFELFKNSMRATVENH-GADEDLPPIKVMVVRGAEDLSIKISDRGGGVSRTILDRLFTYMYSTAPPPPRDGT-----QPPLAGYGYGLPLSRLYARYFHGDMYLVSMEGYGTDAMIFLKAIPVEASEVLPIYSTSSR 375          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.602e-38
Identity = 99/248 (39.92%), Postives = 140/248 (56.45%), Query Frame = -3
Query:   87 RMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNI------YGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 806
            RML+ QH+ + + +    P  IG ID     V V ++A E +  +C + Y S+P+  +      + D      YVPSHLH M+FEL KN++RA  E + ++     PI +IV  G ED+TIK+SD GGG+P   + ++F+Y YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ I   PV N    S F  YQ S  + D  I
Sbjct:  170 RMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL------------SSESIEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK3_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.602e-38
Identity = 98/214 (45.79%), Postives = 126/214 (58.88%), Query Frame = -3
Query:  198 RMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL-GDSQEPLP 806
            RMLI QH  L     NP  P H IG ID   +   V ++A E A  +C + Y  AP+  +        D      YVPSHL  M+FEL KNS+RA  E Y D  +  P ++ +V  G ED++IK+SD GGG+P   + ++F Y+YSTA  P  E T  A     +AG+GYGLPISRLYARYF GDL++ SMEG GTDA ++L  L  +S E LP
Sbjct:  162 RMLINQHTLLFGGDTNPVHPKH-IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA----PLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLP 370          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.086e-38
Identity = 100/249 (40.16%), Postives = 141/249 (56.63%), Query Frame = -3
Query:   87 RMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 806
            RML+ QH+ + + +    P  IG ID K   V V ++A E +  +C + Y ++P+  +        G P     YVPSHLH M+FEL KN++RA  ER  +S     P+ +IV  G ED+TIK+SD GGG+P     ++F+Y+YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I
Sbjct:  170 RMLMNQHILIFSDSQTGNPSHIGSIDPKCDVVAVIQDAFESSKMLCDQYYLTSPELKLTQVNGKFPGQP-IHIVYVPSHLHHMLFELFKNAMRATVER-QESWPSLTPVEVIVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK3_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.356e-37
Identity = 96/214 (44.86%), Postives = 126/214 (58.88%), Query Frame = -3
Query:  198 RMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL-GDSQEPLP 806
            RMLI QH  L     NP  P H IG ID   +   V ++A E A  +C + Y  AP+  +        +      YVPSHL  M+FEL KNS+RA  E + D  +  P ++ +V  G ED++IK+SD GGG+P   + ++F Y+YSTA  P  E T  A     +AG+GYGLPISRLYARYF GDL++ SMEG GTDA ++L  L  +S E LP
Sbjct:  162 RMLINQHTLLFGGDTNPAHPKH-IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPNKPIQVVYVPSHLFHMLFELFKNSMRATVELHEDKKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA----PLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLP 370          
The following BLAST results are available for this feature:
BLAST of CN185955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDK_SCHPO4.800e-5150.95[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK_DROME6.948e-4243.23[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK2_MOUSE4.979e-4046.30[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_RAT6.503e-4047.22[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_HUMAN6.503e-4045.37[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK_ASCSU3.227e-3943.89[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK4_HUMAN1.602e-3839.92[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_HUMAN1.602e-3845.79[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_SPETR6.086e-3840.16[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_MOUSE1.356e-3744.86[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185955 ID=CN185955; Name=CN185955; organism=Citrus sinensis; type=EST; length=814bp
GAGGAGGAATATACAGAAAGCTGCCAATTTATTAGGACCACAATTGACAG
CAATTCATATCTTGGACAAATTGTATAGCTTTCTTTAATAATTCCATCAA
TTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGAAGTTGCATTGAAG
TTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAATTCAGGG
CAAGGGTTCTTGAGAATCCCCCAAGCGCGACAAATGGAGATATGCATCAG
TTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAATACCGA
GCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCATTGTTCC
CTTGTCAGCTGCTAGATCAGTGTTTTCATCCAGAGGGTTTCTGGCAGTGC
TGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATGCCACCT
CCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGCAACTAT
TATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCTCTTCAA
CAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAGATGCAAGTGT
GAAGGGACGTAAGGGAATGTAAAACTGGGATCACCGTAGATATTAAAATC
GGGTGCACTGCCATACTCCCGCAGACAAACACAATGTGCATGCTCACTAG
CATTCCTAGCAACCTGCACTGGAGACATTTTTGTGTCTATGTAGCCAATA
CAATGAGGTGGAGGGTTGGGATTGTGCAATTCTACATGCTGCCCAATAAG
CATACGAATTCCGA
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