CN185949

Overview
NameCN185949
Unique NameCN185949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:202..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 7.281e-39
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDEEHKKKV+AKNALENYAYNMRNT++DEKIG KL  ADKKKIED+I+QAIQWL+ NQLAEADEFEDKMKELESICNPIIAKMYQ
Sbjct:  532 KSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.118e-38
Identity = 73/87 (83.91%), Postives = 82/87 (94.25%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDEEHKKKV+AKNALENYAYNMRNT++DEKIG KL  ADKKK+ED+I++AIQWLD NQL EADEFEDKMKELES+CNPIIAKMYQ
Sbjct:  532 KSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.767e-38
Identity = 82/117 (70.09%), Postives = 86/117 (73.50%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXXXXXXXKIEEVD 355
            KAEDEE KKKV+AKN+LENYAYNMRNTVKDEKIGSKL   DKKKIEDA+DQAI WL+SNQLAE DEFEDKMKELE ICNPIIAKMYQ                        KIEEVD
Sbjct:  534 KAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAGVPMDDDAPPSGGSSAGPKIEEVD 650          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDEEHKKKV++KNALENYAYNMRN VKDEKIG+KL  ADKKKIE+AID +IQWLD NQLAEADEF+DKMKELESICNPIIAKMYQ
Sbjct:  532 KSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.373e-37
Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDEEHKKKV+AKNALENYAYNMRNT+KDEKI SKL   D+ KIEDAI+QAIQWLD NQLAEA+EFEDKMKELES+CNPIIAKMYQ
Sbjct:  532 KSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDEE KKKV+AKNALENYAYNMRNT+KD+KI S+L  ADKK+IEDAID+AI+WLD+NQLAEADEFEDKMKELESICNPIIAKMYQ
Sbjct:  532 KSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.995e-37
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDEEHKKKVDAKNALENYAYNMRNT++DEKIG KL   DKKKIED+I+ AI+WL++NQLAE DEFEDKMKELESICNPIIAKMYQ
Sbjct:  532 KSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.769e-36
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 262
            KAEDEE KKKVDAKNALENYAYNMRNT+KD+KI SKL   DKKKIEDA+D AI WLDSNQLAE +EFEDKMKELE ICNPIIAKMY
Sbjct:  528 KAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMY 613          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.421e-34
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDEE KKKV+AKN+LENYAYNMRNT+KDEKIG KL P +K+KIE A++ AIQWL+ NQ+AE DEFEDK KELE ICNPIIAKMYQ
Sbjct:  531 KAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQ 617          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.018e-32
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDEE KKKV+AKNALENYAYNMRNT+KD+KI  KLD  DK+KIE A+++AI+WL+ NQLAE DE EDK+KELE +CNPIIA++YQ
Sbjct:  534 KAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQ 620          
The following BLAST results are available for this feature:
BLAST of CN185949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HSP71_ARATH7.281e-3987.36Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP72_ARATH2.118e-3883.91Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP71_SOLLC2.767e-3870.09Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP7E_SPIOL4.719e-3886.21Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP72_SOLLC1.373e-3785.06Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7C_PETHY2.342e-3785.06Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP73_ARATH3.995e-3783.91Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_MAIZE5.769e-3684.88Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_SOYBN1.421e-3478.16Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA1.018e-3273.56Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185949 ID=CN185949; Name=CN185949; organism=Citrus sinensis; type=EST; length=539bp
CATTAAGGCTGAAGACGAGGAGCACAAGAAGAAGGTCGACGCCAAGAATG
CCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAG
ATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCAT
TGATCAGGCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATG
AATTTGAAGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATT
GCCAAGATGTATCAAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGA
TGATGCTCCTCCAGCTGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAG
TTGACTAAGCTTCCAGTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTT
TTGACGGTGGGAAAACTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGC
CTTAGGATGAATATTAATTTTTCCTTTTCTTTTTATTTTTCAAATTTTAC
TTTTAATTCGGACCAATTTATATAATGAATATTTTTCGG
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