CN185943

Overview
NameCN185943
Unique NameCN185943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8906 contig Csv1_Contig8906:176..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.213e-50
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = -3
Query:  284 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTKKE 685
            M+SD K+  FEEV+ HNKTKDCWLIISGKVYDV+ FMDDHPGGDEVL+S+TGKDATNDFEDVGHSD+AR+MMDKY+IG+ID S+VP  R Y+ PQQPAYNQDKTPEF               LA  VRHYTKK+
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTKKD 134          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.751e-49
Identity = 94/134 (70.15%), Postives = 105/134 (78.36%), Query Frame = -3
Query:  284 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTKKE 685
            MAS+ K+  FEEV+ HNKTKDCWLIISGKVYDV+ FMDDHPGGDEVL+S+TGKDATNDFEDVGHSD+AR+MM+KYYIG+ID STVP  R Y+ P QPAYNQDKTPEF               LA  VR YTKKE
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTKKE 134          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43
Identity = 79/133 (59.40%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  287 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTKK 685
            M  + K+    EV+ HN  KDCWL+ISGKVYDV+ F+DDHPGGDEVL+SATGKDAT+DFEDVGHS SAR M+D+YY+GDID +T+P K  Y PP QP YNQDKT EF               +AF +R YTK+
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQ 133          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42
Identity = 79/129 (61.24%), Postives = 96/129 (74.42%), Query Frame = -3
Query:  284 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTKKE 670
            K++  EEVA HN   DCWLII GKVY+VS F++DHPGGD+VL+S+TGKDAT+DFEDVGHS +AR MMD+YY+GDID ST+P +  Y+PP+QP YNQDKTPEF               LA A+R YTK E
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKSE 135          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.710e-41
Identity = 77/133 (57.89%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  287 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTKK 685
            M    K+    EV+ HN  KDCWLIISGKVY+V+ F++DHPGG EVL+SATGKDAT+DFED+GHS SAR M+D+YY+GDID ST+P K  Y PP+QP YNQDKT EF               +AF V  YTK+
Sbjct:    1 MGGQSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQ 133          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.138e-40
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = -3
Query:  290 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTK 685
            M  + KI    EV+ HN+  DCW++I+GKVY+V+ F++DHPGGD+VL+S+TGKDAT+DFEDVGHS+SAREMM++YY+G+IDP+T+P+K  Y PP+QP YNQDKT EF               LA  +R YTK
Sbjct:    1 MGDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTK 132          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.659e-39
Identity = 73/127 (57.48%), Postives = 91/127 (71.65%), Query Frame = -3
Query:  290 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTK 670
            KI    EVA HN +KDCWLII+GKVYDV+ F++DHPGGD+VL+SATGKDAT+DFED+GHS SA+ M+D+YY+GDID S++P +  Y PP+QP YN DKT EF                A  +R YTK
Sbjct:    3 KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTK 129          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.842e-37
Identity = 68/128 (53.12%), Postives = 90/128 (70.31%), Query Frame = -3
Query:  287 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXXXXLAFAVRHYTKK 670
            K++   EV+ H++  DCWL+I GKVYDV+ F+DDHPGG +VL+S+T KDAT+DFED+GHS SAR MMD+  +GDID ST+P K +Y PP+QP YNQDKTP+F               +A  +R Y K+
Sbjct:    5 KVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQ 132          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = -3
Query:  437 EQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 691
            +++ +    ++ EEVA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+   G DA+  FEDVGHS  AREM+ +YYIGDI PS
Sbjct:   14 QEVETSVTYYRMEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = -3
Query:  422 SDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRK 679
            S+P +  ++ EEVA  N  ++ W++I G+VYD++ F+ +HPGG+EVL+   G DAT  FEDVGHS  AREM+ +YYIGD+ PS +  K
Sbjct:   16 SEPSVTYYRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPK 103          
The following BLAST results are available for this feature:
BLAST of CN185943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CYB51_ARATH1.213e-5070.15Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB1.751e-4970.15Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC5.455e-4359.40Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_ORYSJ2.073e-4261.24Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5S_TOBAC8.710e-4157.89Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB52_ARATH1.138e-4056.06Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_BOROF3.659e-3957.48Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_CUSRE5.842e-3753.13Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5B_PONAB2.017e-2151.76Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_MOUSE2.017e-2150.00Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185943 ID=CN185943; Name=CN185943; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTTTGAAGGAATAACTTGCCCTTGCTTTCCATCCCAT
TATGCAATAAAAGTAAACATTATCCCATGACCATCAATCCAAAACATTAG
AAACAAGACACTCAAGAGAAGACAGACAATATGGTCTCTGGTGGACTACG
AACCACTATTCAATTTCAGCAAAACCAAACACCATAGGAAAGTAAATAAA
AGATAAATGTCCTAGAACTAAGCTCATGCAAATCACCAGCTTCCCATTCC
GGAGATGACTCATTTTATTGATATTGTGACCTACTCTTTCTTGGTATAGT
GTCTGACCGCAAAGGCTAAACCCAATATCAAGAGCGGCACAAGAATCTGT
AGAATCTTAATAATGAACTCAGGGGTCTTGTCTTGATTGTAAGCAGGTTG
CTGCGGTGGAATATATGCACGTTTCCGAGGAACAGTTGAGGGATCAATGT
CACCAATATAGTACTTGTCCATCATCTCCCTAGCGGAGTCACTGTGACCC
ACATCTTCAAAGTCATTTGTTGCATCTTTCCCAGTTGCAGAAATCAAAAC
CTCATCTCCTCCAGGGTGATCATCCATGAACGAGGACACATCATACACCT
TGCCAGAAATAATAAGCCAGCAATCCTTAGTTTTGTTGTGCGTGGCGACC
TCTTCGAACTGGTGAATCTTTGGATCTGAGGCCATTTGTTCGCTACTGCA
GACGAGAGAGACAGAGAGGAGAGCAAAAGAATTTGGGCTCTCTCCCT
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