CN185937

Overview
NameCN185937
Unique NameCN185937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6065 contig Csv1_Contig6065:1201..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185937 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.074e-29
Identity = 77/198 (38.89%), Postives = 101/198 (51.01%), Query Frame = 1 
Query:  208 GIAGLSSPGFEDIFGTMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSXXXXXXXXXXXXXXNMG------LEMLMNMFGGLGA--------GSLAVPNRSDVPPEQLYATQLSQLQEMGFFDTQENIRALIATAGNVHAAV 759
            G+ G+   G E + G   D   + Q+L NP   QMMQ L+S+P  M Q++ +NPQLR M+DSN QLRE + NPEFL  +TNPE M  M+ LQQ + T                      MG           NMFGG+G          S   P  +  PPEQ +  QL QL+E+GF D   NI AL +T GN++ A+
Sbjct:  325 GMGGMG--GMEGMLG--MDPERVQQLLNNPVAQQMMQRLMSDPAMMQQMITMNPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPGGMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPVNQEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINLAI 518
The following BLAST results are available for this feature:
BLAST of CN185937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBQL_DICDI6.074e-2938.89Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185937 ID=CN185937; Name=CN185937; organism=Citrus sinensis; type=EST; length=759bp
GCAGTTCTTTTGGGTACTCAGGGTGGAAACCAAGCCAGAGAAGGATCGAA
TAACCCATCTACCACTACGTCTGAATCTACCACTGGTTCTCCTGCTCCAA
ACACTAACCCACTTCCTAATCCTTGGATGGCTGCTGGAACTGGAGGTGCT
CAAACAAACACCACAAGGTCAAGTTCTCTTGGGGATGCTAGGCCACAGAC
ACCTGCTGGAATAGCTGGACTTAGTTCCCCTGGTTTTGAAGACATTTTCG
GTACAATGCAGGACACCAATTCACTGAACCAGATGTTGCAAAATCCAGCT
GTCACACAAATGATGCAAAGCCTTCTCTCCAATCCCCAGTACATGAACCA
GATTCTTGGTCTTAATCCACAGCTGCGCAGCATGGTTGATTCCAATTCTC
AACTGAGAGAAATGATACAAAATCCTGAATTTCTTCGTCAGTTGACTAAT
CCTGAGACAATGCAGCAAATGGTGACTTTGCAGCAATTTCTCTTGACTCA
ACTTGGTCGGGCACAGTCAACGCAGCAACCAGGCCAGACTGGTGGAGGCA
CAGGGACTCCTAACATGGGGTTGGAGATGTTAATGAACATGTTTGGTGGA
CTTGGGGCTGGCAGCCTAGCTGTTCCTAACAGATCTGATGTGCCTCCAGA
GCAATTATATGCCACCCAGTTGTCACAACTTCAAGAAATGGGTTTCTTTG
ATACACAAGAAAATATACGGGCTTTAATTGCAACTGCTGGAAATGTCCAT
GCTGCAGTG
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