CN185936

Overview
NameCN185936
Unique NameCN185936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6065 contig Csv1_Contig6065:1588..2242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185936 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.996e-17
Identity = 54/142 (38.03%), Postives = 69/142 (48.59%), Query Frame = -1 
Query:  272 DSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSXXXXXXXXXXXXXPNMG------LEMLMNMFGGLGA--------GSLAVPNRSDVPPEQLYATQLSQLQEMGFFNTQENIRALIATAGNVHAAVERLL 655
            DSN QLRE + NPEFL  +TNPE M  M+ LQQ + T                      MG           NMFGG+G          S   P  +  PPEQ +  QL QL+E+GF +   NI AL +T GN++ A++RLL
Sbjct:  381 DSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPGGMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPVNQEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINLAIDRLL 522
The following BLAST results are available for this feature:
BLAST of CN185936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBQL_DICDI6.996e-1738.03Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185936 ID=CN185936; Name=CN185936; organism=Citrus sinensis; type=EST; length=655bp
CTTACCAATAAAGATTTTCGAAAAAATTNATATGACAAATCTTAATCCCT
TAGAGGTACAGTGACACTNAGGTTCGACAGAACTCTCTAGAAAGAGAGCA
AGTACACAGACAAGTTTTCAGCCCTTACTATGATATATAACTAAAATTAT
TCATACCCAAAATGGGCTTTGAATATGACTCCAGTTCAACCGATTGATCC
CCACCAGTCCTTATCACGGCACTAACCAGGTGATATTAAACATTGATAGC
AACCTACTGACCAGAATTCCCCAAGAGTCGCTCCACTGCAGCATGGACAT
TTCCAGCAGTTGCAATTAAAGCCCGTATATTTTCTTGTGTATTAAAGAAA
CCCATTTCTTGAAGTTGTGACAACTGGGTGGCATATAATTGCTCTGGAGG
CACATCAGATCTGTTAGGAACAGCTAGGCTGCCAGCCCCAAGTCCACCAA
ACATGTTCATTAACATCTCCAACCCCATGTTAGGAGTCCCTGTGCCTCCA
CCAGTCTGGCCTGGTTGCTGCGTTGACTGTGCCCGACCAAGTTGAGTCAA
GAGAAATTGCTGCAAAGTCACCATTTGCTGCATTGTCTCAGGATTAGTCA
ACTGACGAAGAAATTCAGGATTTTGTATCATTTCTCTCAGTTGAGAATTG
GAATC
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