CN185935

Overview
NameCN185935
Unique NameCN185935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VATM_DICDI (Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.185e-31
Identity = 70/104 (67.31%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  323 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFS 634
            Q+IHTIEFVLGAVSNTASYLRLWALSLAHSELSSVF+E++L+                    A+V VLL+ME+LSAFLHALRLHWVEFQNKFY GDG +F P+S
Sbjct:  702 QVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYS 805          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP4_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 66/108 (61.11%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY GDGYKFSPFSF
Sbjct:  723 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVMNSGLQTRGWGGIVGVFIIFAVFAVLTVAILLIMEGLSAFLHALRLHWVEFQNKFYVGDGYKFSPFSF 830          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP3_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 3 OS=Homo sapiens GN=TCIRG1 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 68/111 (61.26%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  317 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXFA-----TVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFA 634
            Q IHTIEF LG VSNTASYLRLWALSLAH++LS V +  V+ +                  FA     TV +LLVME LSAFLHALRLHWVEFQNKFY G GYK SPF+FA
Sbjct:  716 QAIHTIEFCLGCVSNTASYLRLWALSLAHAQLSEVLWAMVMRIGLGLGREVGVAAVVLVPIFAAFAVMTVAILLVMEGLSAFLHALRLHWVEFQNKFYSGTGYKLSPFTFA 826          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP4_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL-----LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH+ELS V +  V+     L  W                  TV +LLVME LSAFLHALRLHWVEFQNKFYEG G KFSPFSF
Sbjct:  716 QAIHTIEYCLGCISNTASYLRLWALSLAHAELSEVLWTMVMSIGLRLQGWAGLVGVFIIFAVFAVL--TVAILLVMEGLSAFLHALRLHWVEFQNKFYEGAGSKFSPFSF 823          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP1_PONAB (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 63/108 (58.33%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  720 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSF 827          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP1_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 63/108 (58.33%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  720 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSF 827          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP1_BOVIN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Bos taurus GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 63/108 (58.33%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  721 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLKVKSLAGGLALFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSF 828          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP1_CHICK (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Gallus gallus GN=ATP6V0A1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 63/108 (58.33%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LLVME LSAFLHALRLHW+EFQNKFY G G+KF PFSF
Sbjct:  721 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHTGLSVRSLAGGFGLVFIFAAFATLTVAILLVMEGLSAFLHALRLHWIEFQNKFYTGTGFKFLPFSF 828          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP1_RAT (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 63/108 (58.33%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  721 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGTGFKFLPFSF 828          
BLAST of CN185935 vs. ExPASy Swiss-Prot
Match: VPP1_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 63/108 (58.33%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  320 QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 634
            Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  722 QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGTGFKFLPFSF 829          
The following BLAST results are available for this feature:
BLAST of CN185935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VATM_DICDI1.185e-3167.31Vacuolar proton translocating ATPase 100 kDa subun... [more]
VPP4_HUMAN1.227e-2861.11V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPP3_HUMAN2.733e-2861.26V-type proton ATPase 116 kDa subunit a isoform 3 O... [more]
VPP4_MOUSE4.661e-2861.82V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPP1_PONAB6.731e-2758.33V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_HUMAN6.731e-2758.33V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_BOVIN6.731e-2758.33V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_CHICK8.791e-2758.33V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_RAT1.148e-2658.33V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_MOUSE1.148e-2658.33V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185935 ID=CN185935; Name=CN185935; organism=Citrus sinensis; type=EST; length=722bp
CTTTGCAATTGTTACAGATGGGATGGGACTGACTAACTGCCCTCAACAAA
CGATGCTGCTAGCCTAATAAGGAAAACTGCTTATTCCTTCCCAATAATAA
ATAAACCACCATTGAAAAGGGAACGGGTCAATGCTCGCATGCTTAAAAAG
TTTTCTCCAATGGCCTCTACAAGATACATCCCGATCAACCTCTTCCATGA
TGTTCAAATTAAAAAAATGAGCACAGATCCCAAAGCTATGCACACACAAC
TGAATTATCTTCGGACGGTAACTATTTATTCAATCAAGTGTATCATTCAT
CTTCATCATCAAGCAATGCAAATGAAAATGGAGAGAACTTGTAACCGTCT
CCTTCGTAAAACTTGTTCTGGAATTCCACCCAGTGAAGACGCAAAGCATG
CAAGAAAGCACTAAGAGTTTCCATCACCAGCAATACGCCCACAGTTGCAA
ATATGAAGACGATGATGCCAACAATAAGGATAAGTATATTATTGTACCCC
CAAGCAAGGAGAAGGACCTTCTCATAGAACACACTTGATAGTTCCGAGTG
GGCAAGACTCAGAGCCCATAATCGAAGGTAAGAAGCTGTGTTTGAAACTG
CTCCAAGTACAAACTCAATTGTGTGTATCATCTGATGTACAAAAACTTCA
CTGAACTCAAATTCCTCATGACCATGGGAATCATGATTTGTATCTGGCTG
AAGAGACTCGTCTGTGCTCTGG
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