CN185934

Overview
NameCN185934
Unique NameCN185934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VATM_DICDI (Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 8.054e-55
Identity = 103/182 (56.59%), Postives = 130/182 (71.43%), Query Frame = 1
Query:  136 WNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIF 681
            W   V  EKSIYHT+N+   DV +KCL+ +GW+P    ++IQ AL  A   S + V ++  ++ T+ SPPT+F TNK+TS+FQEIV+AYG+A YRE NP V TIVTFPFLF VMFGD GHG  LLL  L LI  EKKLA +KL+++  M F GRYV+ +M+LFSIY G IYNE FS+P  IF
Sbjct:  307 WKKKVLLEKSIYHTMNLFDYDVGRKCLIAKGWTPKDKIEEIQLALRTATTRSGALVPSVLSIIKTEGSPPTHFETNKYTSSFQEIVNAYGIAHYREVNPAVLTIVTFPFLFGVMFGDVGHGALLLLSALGLISLEKKLAGKKLNELIQMPFDGRYVLFLMSLFSIYVGFIYNECFSIPMNIF 488          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_XENTR (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 101/197 (51.27%), Postives = 134/197 (68.02%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL+ E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ +VDAYG+  YRE NP  +TI+TFPFLFAVMFGD+GHGI + L  + ++VRE ++ SQK+D ++  M F GRY+IL+M LFSIYTGLIYN+ FS    +F  S
Sbjct:  282 VLQAAAKSLRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVADLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTYGFQNLVDAYGIGSYREINPAPYTIITFPFLFAVMFGDFGHGILMTLFAVWMVVRESRILSQKIDNELFTMMFSGRYIILLMGLFSIYTGLIYNDCFSKALNLFGSS 478          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_XENLA (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.419e-53
Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL+ E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ +VDAYG+  YRE NP  +TI+TFPFLFAVMFGD+GHGI + L  + ++VRE ++ SQK+D ++  M F GRY+IL+M LFS YTGLIYN+ FS    +F  S
Sbjct:  282 VLQAAAKSLRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVADLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTYGFQNLVDAYGIGSYREINPAPYTIITFPFLFAVMFGDFGHGILMTLFAVWMVVRESRILSQKIDNELFSMMFSGRYIILLMGLFSTYTGLIYNDCFSKALNLFGSS 478          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_RAT (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.286e-52
Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL+ E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ IVDAYG+  YRE NP  +T++TFPFLFAVMFGD+GHGI + L  + +++RE ++ SQK + ++  M F GRY+IL+M LFSIYTGLIYN+ FS    IF  S
Sbjct:  282 VLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTHGFQNIVDAYGIGTYREINPAPYTVITFPFLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSMVFSGRYIILLMGLFSIYTGLIYNDCFSKSLNIFGSS 478          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.286e-52
Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL+ E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ IVDAYG+  YRE NP  +T++TFPFLFAVMFGD+GHGI + L  + +++RE ++ SQK + ++  M F GRY+IL+M LFSIYTGLIYN+ FS    IF  S
Sbjct:  289 VLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTHGFQNIVDAYGIGTYREINPAPYTVITFPFLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKHENEMFSMVFSGRYIILLMGLFSIYTGLIYNDCFSKSLNIFGSS 485          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_CAEEL (Probable V-type proton ATPase 116 kDa subunit a OS=Caenorhabditis elegans GN=unc-32 PE=2 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.857e-51
Identity = 97/186 (52.15%), Postives = 129/186 (69.35%), Query Frame = 1
Query:  136 WNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKL-DDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            W   V++ KSIYHTLN+ ++DVT+KCL+ E W P+    +I+ AL+R   +S SQV +I   + T E+PPTY +TNKFT  FQ IVDAYG+A YRE NP  +T+++FPFLFAVMFGD GHG  +LL  L  I++EK+L + ++ D+I    FGGRYVI +M  FSIYTG +YN+ FS     F  S
Sbjct:  329 WLTKVRKIKSIYHTLNLFNIDVTQKCLIAEVWCPIAELDRIKMALKRGTDESGSQVPSILNRMETNEAPPTYNKTNKFTKGFQNIVDAYGIATYREINPAPYTMISFPFLFAVMFGDMGHGAIMLLAALFFILKEKQLEAARIKDEIFQTFFGGRYVIFLMGAFSIYTGFMYNDVFSKSINTFGSS 514          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP4_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.167e-51
Identity = 98/197 (49.75%), Postives = 136/197 (69.04%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQK-LDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            LLQ     +  W + V++ K++YH LNM ++DVT++C++ E W PV  T+ I+ ALE+    S S +  I   + TK  PPT+ RTNKFT+ FQ IVDAYGV  YRE NP  +TI+TFPFLFAVMFGD GHG+ +L+  L +++ E+ L +QK  +++ ++ F GRY+IL+M +FSIYTGLIYN+ FS  F IF  S
Sbjct:  284 LLQEAAANWHSWVIKVQKMKAVYHVLNMCNIDVTQQCIIAEIWFPVADTRHIKKALEQGMELSGSSMIPIMTEVETKTDPPTFNRTNKFTAGFQNIVDAYGVGSYREINPAPYTIITFPFLFAVMFGDCGHGMVMLMAALWMVLNERHLLAQKSTNEMWNIFFNGRYLILLMGIFSIYTGLIYNDCFSKSFNIFGSS 480          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_PONAB (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.167e-51
Identity = 98/197 (49.75%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL+ E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ IVDAYG+  YRE NP  +TI+TFPFLFAVMFGD+GHGI + L  + +++RE ++ SQK + ++    F GRY+IL+M +FS+YTGLIYN+ FS    IF  S
Sbjct:  282 VLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTYGFQNIVDAYGIGTYREINPAPYTIITFPFLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSTVFSGRYIILLMGVFSMYTGLIYNDCFSKSLNIFGSS 478          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.167e-51
Identity = 98/197 (49.75%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL+ E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ IVDAYG+  YRE NP  +TI+TFPFLFAVMFGD+GHGI + L  + +++RE ++ SQK + ++    F GRY+IL+M +FS+YTGLIYN+ FS    IF  S
Sbjct:  282 VLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTYGFQNIVDAYGIGTYREINPAPYTIITFPFLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSTVFSGRYIILLMGVFSMYTGLIYNDCFSKSLNIFGSS 478          
BLAST of CN185934 vs. ExPASy Swiss-Prot
Match: VPP1_CHICK (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Gallus gallus GN=ATP6V0A1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.136e-51
Identity = 99/197 (50.25%), Postives = 130/197 (65.99%), Query Frame = 1
Query:  103 LLQTIGDQFEQWNLLVKREKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLD-DITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHS 690
            +LQ        W + V++ K+IYHTLN+ ++DVT+KCL  E W PV     IQ AL R    S S V +I   + T ++PPTY +TNKFT  FQ IVDAYG+  YRE NP  +TI+TFPFLFAVMFGD+GHGI + L  + +++RE ++ SQK D ++    F GRY+IL+M LFS YTGLIYN+ FS    +F  S
Sbjct:  282 VLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLSAEVWCPVADLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTCGFQNIVDAYGIGTYREINPAPYTIITFPFLFAVMFGDFGHGILMTLIAIWMVLRESRILSQKSDNEMFSTVFSGRYIILLMGLFSTYTGLIYNDCFSKSLNMFGSS 478          
The following BLAST results are available for this feature:
BLAST of CN185934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VATM_DICDI8.054e-5556.59Vacuolar proton translocating ATPase 100 kDa subun... [more]
VPP1_XENTR1.519e-5351.27V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_XENLA4.419e-5350.76V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_RAT1.286e-5250.76V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_MOUSE1.286e-5250.76V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_CAEEL1.857e-5152.15Probable V-type proton ATPase 116 kDa subunit a OS... [more]
VPP4_MOUSE3.167e-5149.75V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPP1_PONAB3.167e-5149.75V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_HUMAN3.167e-5149.75V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_CHICK4.136e-5150.25V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185934 ID=CN185934; Name=CN185934; organism=Citrus sinensis; type=EST; length=743bp
TTTATGAGATTCGATAAACAGCTCAGGCAATTTCGGAGGTTTCGGGAAGC
CTTTCAGAGCTGAAGACTACTCTAGATGCTGGGCTGCTTCCTCTGTGGAA
ATTTATTGCAAACTATTGGAGACCAATTTGAACAATGGAACCTTTTGGTC
AAGAGGGAGAAATCAATCTATCACACTTTGAACATGCTTAGCCTTGATGT
GACCAAAAAGTGTCTTGTGGGTGAGGGGTGGAGTCCTGTTTTCGCCACAA
AGCAGATTCAGGATGCATTGGAGCGGGCTGCATTTGACTCCAATTCTCAA
GTTGGAGCTATTTTTCAGGTTTTGCATACGAAAGAGTCTCCGCCTACCTA
TTTTCGCACAAACAAATTTACTTCTGCCTTTCAGGAGATTGTTGATGCAT
ATGGGGTGGCTAAGTATCGAGAAGCAAACCCTGGTGTATTCACCATTGTC
ACATTCCCTTTTCTTTTCGCTGTCATGTTTGGTGACTGGGGGCATGGAAT
ATGCTTATTACTTGGGACCCTGGTTCTTATAGTCCGGGAAAAGAAACTTG
CAAGCCAGAAGCTTGATGACATTACAGACATGACCTTTGGCGGTCGTTAT
GTTATTTTGATGATGGCACTCTTTTCAATTTACACCGGCTTAATCTATAA
TGAGTTCTTCTCAGTTCCATTCGAAATATTTAGTCACTCAGCGTATGCAT
GCCGTGATCTCTCTTGCAGTGAGGCTACTACAGTTGGCTTAAT
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