CN185933

Overview
NameCN185933
Unique NameCN185933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12264 contig Csv1_Contig12264:850..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = -1
Query:  270 MATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 554
            MA LGG R+V    N+ EI +LARFAV+EHNKKQN+ L+F           SGTLY ITLEA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct:    1 MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = -1
Query:  255 QTMATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 560
            + MA +GGV +V A  N+ E+ +LARFAVDEHNKK+N+ L+F           +GTL+ +TLE  E GQKKL+EAKVW KPW+ FKEL+EF P + + + T+
Sbjct:   32 EEMALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  270 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 545
            LGGV  V    N+  +V+LARFAV EHNKK NS L+F           +GTLY  T+E  EG  KKL+EAKVWEKPWM FKEL+EF PV  S
Sbjct:   47 LGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  288 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEF 545
            LGGV ++    N+ EI +LARFA+ EHNK+QN  L+F           +GT+Y +TLEA EG Q K FEAKVW KPWM FK+L+EF
Sbjct:   35 LGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEF 120          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = -1
Query:  258 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSST 545
            LGG  +  + AN+ E   LARFAVDEHNK++N+ L+F           +GTL+ +TLEA E G+KK++EAKVW KPW+ FKEL+EF     + + T
Sbjct:   48 LGGAHDAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFT 143          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = -1
Query:  261 GGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSS 542
            GG+++V A  N+ ++  LARFAV+EHN+K N+ L F           +GT+Y +T+E  +G  KKL+EAKVWEKPW  FK+L+EF PV +  S+
Sbjct:   42 GGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPVEEGASA 135          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53          
The following BLAST results are available for this feature:
BLAST of CN185933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CYTI_VIGUN3.873e-2458.95Cysteine proteinase inhibitor OS=Vigna unguiculata... [more]
CYT6_ARATH5.592e-2350.98Cysteine proteinase inhibitor 6 OS=Arabidopsis tha... [more]
CYT1_ORYSJ3.393e-2056.52Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT3_ARATH2.199e-1953.49Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYT12_ORYSJ4.899e-1947.92Cysteine proteinase inhibitor 12 OS=Oryza sativa s... [more]
CYT1_MAIZE6.398e-1946.81Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
SEP3_ARATH4.147e-18100.00Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
SEP1_ARATH4.147e-18100.00Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS8_ORYSJ4.147e-18100.00MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS7_ORYSJ4.147e-18100.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185933 ID=CN185933; Name=CN185933; organism=Citrus sinensis; type=EST; length=698bp
CGGTTTTGTATATATATTAAACACCAAAGGTCATTTCAATTCTTTTTCAC
ACAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGAC
ACATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATT
TGGTGTGAGAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTC
TCTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAA
GCTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAAC
TCCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTT
CTTCTGACCTCCTTCGGGAGCCTCCAAGGTGATGTCGTACAGAGTCCCTG
AAACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAA
TTCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGAT
CTCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAG
CCATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCT
TTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTT
CTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
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