CN185922

Overview
NameCN185922
Unique NameCN185922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2031 contig Csv1_Contig2031:853..1527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL4_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            ++ F+  S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            KV K  ++++P+ L FN IA S
Sbjct:  113 KVHFESGSTLKKFLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGWKPFPINHGKTSDETLLEDVIKVCKKFMERDPDELRFNAIALS 231          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL3_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            ++ F+  S   KF + +A++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:  110 KMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL3_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            ++ F+  S   KF + + ++ P+ERA FLEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:  110 KMHFESGSTLKKFLEESVSMSPEERAKFLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL3_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            ++ F+  S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:  110 KMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL3_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 3
Query:   12 SEIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            +++ F+  S   KF + +A++ P ERA +LE+   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:  109 NKMHFESGSTLKKFLEESASMSPDERARYLESYDAIPVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL3_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            ++ F+  S   KF + +  + P+ERA  LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:  110 KMHFESGSALKKFLEESVAMSPEERARHLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Sus scrofa GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  105 KLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_HORSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Equus caballus GN=UCHL1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  105 KLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDLLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Bos taurus GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  134 KLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGTSSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 252          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Rattus norvegicus GN=Uchl1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  105 KLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
The following BLAST results are available for this feature:
BLAST of CN185922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UCHL4_MOUSE9.529e-1738.66Ubiquitin carboxyl-terminal hydrolase isozyme L4 O... [more]
UCHL3_BOVIN1.625e-1638.66Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_MOUSE2.123e-1638.66Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_HUMAN4.729e-1637.82Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_PIG1.054e-1537.50Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_RAT3.065e-1537.82Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL1_PIG1.987e-1432.77Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_HORSE1.987e-1432.77Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_BOVIN1.987e-1432.77Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_RAT3.389e-1432.77Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185922 ID=CN185922; Name=CN185922; organism=Citrus sinensis; type=EST; length=674bp
GCAGGGTCACTTCGGAAATCAAGTTTCAAGATGATTCATTCTTCGATAAA
TTTTACAAGTCCACAGCGAACTTGGATCCACAAGAGCGTGCAGCATTTCT
TGAGAATGATAAGGAAATGGAAGTTGCTCATTCGGTAGCAGCTTCAGCTG
GTGACACAGAGGCTACCGATGACGTGAATGATCATTTTATCTGCTTCACC
TGTGTGGATGGGGAACTTTATGAACTTGATGGAGGGAAGTCGGGGCCAAT
ATCCCATGGTGCTTCGTCTCCAAGCAGCTTATTGCTGGATGCAGCTAAAG
TGATAAAGGGCATGATCCAGAAAAATCCTGAATCACTGAACTTCAATGTA
ATTGCCTTTTCGAAGAAAGCTTGAGGTGCATTTTAATGTTGAGAATCTGA
GCTTATTCAGTTCCTGCAAATGATAAAGCTTCTTACTGCAGTTTTCAGTT
TGTGCACATCCACATATGCGCAAACAAACTAGTTCAGTGATGGTTGTAGG
TCGACTTAGGTGGCTTTACTTTCAGATGGTACAGCATGTTAATTCTGGTT
GCTGTGTTTCAGTTTTAGAGCAGATTCATTTTACACCTTGGGAGTGCCAG
CATGACTCTTAGCCCTACAATGCATGTTATGCTACATTTTCTGCTGATGT
TAAATTTAAATGGGTGAACAAATT
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