CN185911

Overview
NameCN185911
Unique NameCN185911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185911_ssr665 microsatellite CN185911_ssr665:665..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.729e-71
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = -1
Query:  241 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 657
            PKKRTF+KFS+RGVDLD LLDM  DELVKLF ARARRRFQRGLKRKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   15 PKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.853e-71
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = -1
Query:  241 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 657
            PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRFQRGLKR+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   13 PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 5.563e-70
Identity = 128/139 (92.09%), Postives = 136/139 (97.84%), Query Frame = -1
Query:  241 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 657
            PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.563e-70
Identity = 129/140 (92.14%), Postives = 135/140 (96.43%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.563e-70
Identity = 129/140 (92.14%), Postives = 135/140 (96.43%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.086e-65
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = -1
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.389e-65
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = -1
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.587e-63
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            L KKRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:   13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.817e-60
Identity = 109/140 (77.86%), Postives = 127/140 (90.71%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            L KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   13 LKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
The following BLAST results are available for this feature:
BLAST of CN185911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_ELAOL1.729e-7194.9640S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_PICMA3.853e-7194.9640S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS15_ORYSJ5.563e-7092.0940S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS154_ARATH5.563e-7092.1440S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH5.563e-7092.1440S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS153_ARATH1.086e-6589.8640S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS155_ARATH5.389e-6589.8640S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS152_ARATH6.587e-6383.5740S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_PODAN6.817e-6077.8640S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_RAT1.519e-5978.2640S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185911 ID=CN185911|Name=CN185911|organism=Citrus sinensis|type=EST|length=774bp
TTTTTTTTTTTAGGAAACAAACACAACAGCTTTTGACTGACATAAAAATA
ACCCTTTATCCAAGCCACATAACACCTCTTTAAACTACACATCACTTCCA
TTATCTAGATTAACAACTGAAACGCTAGTATTTAGTCCAACAACAAAAAA
AAAAAAAGTAACCACAAAAAATTTGATCAACTTCGATGTTTTCTGAAAAT
AACAATAAGCTAAATATCCAGATATCCAGCATACATCTCACTTAAGAGGA
ATGAACCTTGAGGAATGGGTAGCACCAATACCAGGTCTACCATGCTTCAC
AGGCTTGTATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCG
GCTTGATTTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATG
CTTCCAATCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAAC
TGGTTCGGGCTTCTCACCAGGTGGAGCCTCCCTTTTCGCCTTGCGAAGCT
TCTTGATCAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTG
CGCGCACGTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATCAAG
AAGAGCGTCCAAATCCACGCCTCTGAAACTGAACTTCTTGAACGTTCTCT
TCTTCGGCAGTCCTGCCGCCGCCGCCACCGCAACATCAGCATCGCCATCC
GCCATGGTTAGAGCTGGGACTGGTGAGATAAACAACTGCGAGTGTGAAGA
GAGGCTCCCGCTGGATCTGATCCT
back to top