CN185897

Overview
NameCN185897
Unique NameCN185897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig430 contig Csv1_Contig430:60..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185897 vs. ExPASy Swiss-Prot
Match: CEFD_STRCL (Isopenicillin N epimerase OS=Streptomyces clavuligerus GN=cefD PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 57/226 (25.22%), Postives = 96/226 (42.48%), Query Frame = 3
Query:   87 IARINNGSFGCCPKSVISAQQKWQLEFLKQPDDFYFNRLKDEILKSRLVIRDLVNADHVDEISIVDNATTATAIVLQSVAWEFLQGKFNKGDAVVMLQYAYGAVKKSLEAYVTRAGGYVIEAWFLFPVNSDGEIVSEFRKALERGKANGRKVRLAMIDHVTSIPSVPIPVKELIKICREEGVDKVFVDGAQGIGCVDVDMKEIGADFYTGTLNKWVFCPPGAVFLY 764
            +  +N GS G  P+S       ++     +P DF    +   + ++R  +  L+  D +  +++  N T A  +V  S+  E         D    +++ +  V         R  G  +  + L  + SD   ++    A     A G + RL    HV S   + +P  EL +  R  G+  V VDGA   G +D+D+  I  DFY G+ +KW+  P G  FL+
Sbjct:   19 VVNLNTGSGGPLPRSAFERVTGFRAHLAAEPMDFLLREVPALLWQARESLARLIGGDPL-RLALATNVTAAVNLVASSLRLEAPGEILLSDDEYTPMRWCWERV--------ARRHGLELRTFRLPELPSDPAEITAAAVA-----AMGPRTRLFFFSHVVSTTGLILPAAELCEEARARGITTV-VDGAHAPGFLDLDLSRIPCDFYAGSGHKWLLAPTGVGFLH 229          
BLAST of CN185897 vs. ExPASy Swiss-Prot
Match: CEFD_NOCLA (Isopenicillin N epimerase OS=Nocardia lactamdurans GN=cefD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 61/228 (26.75%), Postives = 97/228 (42.54%), Query Frame = 3
Query:   87 IARINNGSFGCCPKSVISAQQKWQLEFLKQPDDFYFNRLKDEILKSRLVIRDLVNADHVDEISIVDNATTATAIVLQSVAWEFLQGKFNKGDAVVMLQYAYGAVKKSLEAYVTRAGGYVIEAWFL--FPVNSDGEIVSEFRKALERGKANGRKVRLAMIDHVTSIPSVPIPVKELIKICREEGVDKVFVDGAQGIGCVDVDMKEIGADFYTGTLNKWVFCPPGAVFLY 764
            +  +N GS G  P+ V   +   +      P DF   +L   +  +R  +   + A   + ++   N T A  +V  SV     Q     G  +++    Y  ++   E  V R  G V+  + L   P+ S  E+V     A+      G + RL    HV S   + +P   L +  R  GV  V VDGAQ  G  D+D+  +  D+Y G+ +KW+  P G  FL+
Sbjct:   19 VTNLNAGSCGPLPRPVFD-RVTVRARMAAGPMDFLSRQLPPLLWTARERLAGYLGA-RPERLAFATNVTGAVNLVASSV-----QPHLAAGGEILLSDQEYAPMRWCWER-VARHQGLVVRTFRLPVQPLGSPDEVVEAATAAM------GPRTRLLFFSHVVSSTGLVLPATRLCEEARRRGVLTV-VDGAQAPGFTDLDLAALPCDYYAGSGHKWLLAPTGVGFLH 231          
The following BLAST results are available for this feature:
BLAST of CN185897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CEFD_STRCL1.133e-1225.22Isopenicillin N epimerase OS=Streptomyces clavulig... [more]
CEFD_NOCLA3.646e-1126.75Isopenicillin N epimerase OS=Nocardia lactamdurans... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185897 ID=CN185897; Name=CN185897; organism=Citrus sinensis; type=EST; length=803bp
TACCTACTTGCCTGAAAGCCTGAACTTTCCCTACTTTGATTTCAGACACT
GAACTCCTATCTGAATTCTCACACCATGTCCAAAACATAGCTAGAATCAA
TAATGGAAGCTTTGGTTGTTGCCCGAAGAGTGTTATATCAGCACAGCAGA
AGTGGCAACTTGAGTTCCTCAAACAACCTGATGACTTTTACTTCAATCGG
CTGAAAGATGAGATTTTGAAATCCAGACTCGTGATCAGAGACTTGGTCAA
TGCTGACCATGTTGATGAAATATCAATTGTTGATAATGCCACCACTGCTA
CAGCCATTGTGTTGCAGAGTGTTGCTTGGGAATTTTTGCAAGGGAAGTTT
AACAAAGGTGATGCTGTTGTCATGCTTCAATATGCTTATGGTGCTGTGAA
AAAATCTCTGGAAGCATATGTTACGCGTGCAGGTGGGTATGTTATTGAAG
CTTGGTTTCTATTTCCTGTTAATTCTGATGGTGAGATTGTCAGTGAGTTT
CGGAAAGCTTTAGAAAGAGGGAAAGCCAATGGTAGGAAAGTCAGATTGGC
TATGATTGATCATGTGACGTCTATTCCTAGTGTTCCGATTCCGGTTAAAG
AATTGATCAAGATTTGTCGGGAAGAGGGTGTCGATAAAGTATTTGTTGAT
GGTGCACAGGGGATTGGGTGTGTTGATGTTGACATGAAAGAAATTGGGGC
TGATTTTTACACTGGTACTTTGAACAAGTGGGTTTTTTGCCCGCCTGGGG
CAGTGTTTTTGTATTGTAGGAAAATCAAATGAATTGAATGATTTGCATCA
CCC
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